CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87969
EES05656
KXG25227
KXG35630
KXG35834	nucleus
OQU81018	nucleus
OQU85888
OQU91059	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43060.1	OQU91059	AT1G10120.1	23161888
AT2G43060.1	OQU91059	AT1G10120.1	23161888
AT2G43060.1	KXG35834	AT1G68920.1	23161888
AT2G43060.1	OQU81018	AT1G68920.1	23161888
AT2G43060.1	KXG35834	AT1G68920.1	23161888
AT2G43060.1	OQU81018	AT1G68920.1	23161888
AT2G43060.1	KXG25227	AT1G74660.1	23161888
AT2G43060.1	KXG35630	AT1G74660.1	23161888
AT2G43060.1	EES05656	AT4G34530.1	21798944
AT2G43060.1	EER87969	AT5G25190.1	23161888
AT2G43060.1	OQU85888	AT5G25190.1	23161888

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d001982_P001	Maize	nucleus	73.43	73.08
Zm00001d026510_P001	Maize	nucleus	66.67	66.35
TraesCS2D01G499200.1	Wheat	nucleus, plastid	56.04	58.0
Os04t0660100-01	Rice	cytosol	54.59	55.94
TraesCS2B01G527100.1	Wheat	nucleus, plastid	54.11	55.72
TraesCS2A01G499000.1	Wheat	plastid	54.11	55.72
HORVU2Hr1G111110.2	Barley	mitochondrion	53.62	54.15
CDY30379	Canola	cytosol	14.49	48.39
GSMUA_Achr11P...	Banana	nucleus	33.82	44.3
Bra037738.1-P	Field mustard	nucleus	30.43	39.87
AT2G43060.1	Thale cress	nucleus	29.95	39.74
CDY56346	Canola	nucleus	25.12	39.1
CDY55504	Canola	nucleus	28.99	38.22
Bra004740.1-P	Field mustard	nucleus	28.99	38.22
CDY53659	Canola	nucleus	28.5	37.82
PGSC0003DMT400014179	Potato	mitochondrion	22.22	35.94
Solyc12g042010.1.1	Tomato	mitochondrion	20.77	33.86

Protein Annotations

EnsemblPlants:KXG27318	EnsemblPlantsGene:SORBI_3006G250500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0009653	GO:GO:0009719	GO:GO:0009741	GO:GO:0009826	GO:GO:0009987	GO:GO:0016043
GO:GO:0016049	GO:GO:0040007	GO:GO:0046983	PANTHER:PTHR33124	PANTHER:PTHR33124:SF8	ProteinID:KXG27318
ProteinID:KXG27318.1	SEG:seg	UniParc:UPI00081AB40D	UniProt:A0A1B6PNS1	MapMan:15.5.32	:

Description

hypothetical protein

Coordinates

chr6:-:58924931..58930474

Molecular Weight (calculated)

22820.6 Da

IEP (calculated)

12.502

GRAVY (calculated)

-0.632

Length

207 amino acids

Sequence
(BLAST)

001: MAGKRTRTAR NQHQPPPSPP NPNPNRRRRV ADPAASDERP SKRMLAFHFL RALARIHSTT PAPRRPRTIR RAAYSSMARA ASPRRAWTQA LLRQARARRV
101: TVRSSRRAVL LRRRVSAAAP PLMLRASAGE TSAPTPPPPA LAAVAPRGPP PRQAGEPARA DALRQLVPGG AEMEYCSLLD ETADYVRCLR AQVQLMQSLV
201: DLFSAQQ

Best Arabidopsis Sequence Match ( AT2G43060.1 )
(BLAST)

001: MASADKLINT DVPEKDVFAF HFLQSLSNLR KQNPFDTPDQ KNYRVRKIKK AAYVSMARAA GGSSRLWSRA LLRRADKDDN KIVRFSRRKW KISSKRRRSN
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK

Arabidopsis Description

IBH1Transcription factor IBH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.