Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005964_P002 | nucleus |
| Zm00001d013357_P001 | nucleus |
| Zm00001d017778_P001 | |
| Zm00001d020459_P001 | |
| Zm00001d020826_P001 | nucleus |
| Zm00001d032177_P001 | |
| Zm00001d033870_P001 | nucleus |
| Zm00001d035835_P001 | |
| Zm00001d045120_P001 | |
| Zm00001d050452_P001 | |
| Zm00001d051569_P001 | |
| Zm00001d052026_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG27318 | Sorghum | plastid | 66.35 | 66.67 |
| Zm00001d001982_P001 | Maize | nucleus | 61.06 | 61.06 |
| TraesCS2D01G499200.1 | Wheat | nucleus, plastid | 55.29 | 57.5 |
| TraesCS2B01G527100.1 | Wheat | nucleus, plastid | 54.33 | 56.22 |
| TraesCS2A01G499000.1 | Wheat | plastid | 52.88 | 54.73 |
| Os04t0660100-01 | Rice | cytosol | 52.88 | 54.46 |
| HORVU2Hr1G111110.2 | Barley | mitochondrion | 52.88 | 53.66 |
| CDY30379 | Canola | cytosol | 14.42 | 48.39 |
| GSMUA_Achr11P... | Banana | nucleus | 32.69 | 43.04 |
| AT2G43060.1 | Thale cress | nucleus | 28.85 | 38.46 |
| CDY56346 | Canola | nucleus | 24.52 | 38.35 |
| Bra037738.1-P | Field mustard | nucleus | 28.37 | 37.34 |
| CDY55504 | Canola | nucleus | 27.88 | 36.94 |
| Bra004740.1-P | Field mustard | nucleus | 27.88 | 36.94 |
| CDY53659 | Canola | nucleus | 27.4 | 36.54 |
| PGSC0003DMT400014179 | Potato | mitochondrion | 22.12 | 35.94 |
| Solyc12g042010.1.1 | Tomato | mitochondrion | 21.15 | 34.65 |
Protein Annotations
| EnsemblPlants:Zm00001d026510_P001 | EnsemblPlants:Zm00001d026510_T001 | EnsemblPlantsGene:Zm00001d026510 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | PANTHER:PTHR33124 | PANTHER:PTHR33124:SF8 | ProteinID:AQK46812.1 |
| SEG:seg | UniParc:UPI000220F4BD | UniProt:K7TT58 | MapMan:15.5.32 | : | : |
Description
Putative HLH DNA-binding domain superfamily protein
Coordinates
chr10:-:147364599..147365225
Molecular Weight (calculated)
22303.9 Da
IEP (calculated)
12.503
GRAVY (calculated)
-0.535
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGKRTTAR HQHNHPPPPP PNPSPNRGRG VADPPPASDD SPSSKRMLAF HFLRALARIH STTPAPRRPR TIRRAAYSSM ARAASPRRAW TQALLLRRAR
101: SRGVAVVGSS RRAVLLRRRV SASAPPPMLR ASAGATSAAA PPVQGPPPRQ AGEPARADAL RRIVPGGAGM EYCSLLDETA DYVLHLRAQV QLMQSLVDLF
201: SPPNPTSN
101: SRGVAVVGSS RRAVLLRRRV SASAPPPMLR ASAGATSAAA PPVQGPPPRQ AGEPARADAL RRIVPGGAGM EYCSLLDETA DYVLHLRAQV QLMQSLVDLF
201: SPPNPTSN
001: MASADKLINT DVPEKDVFAF HFLQSLSNLR KQNPFDTPDQ KNYRVRKIKK AAYVSMARAA GGSSRLWSRA LLRRADKDDN KIVRFSRRKW KISSKRRRSN
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK
Arabidopsis Description
IBH1Transcription factor IBH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.