Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G527100.1 | Wheat | nucleus, plastid | 94.03 | 94.03 |
| TraesCS2D01G499200.1 | Wheat | nucleus, plastid | 93.03 | 93.5 |
| HORVU2Hr1G111110.2 | Barley | mitochondrion | 77.61 | 76.1 |
| Os04t0660100-01 | Rice | cytosol | 66.67 | 66.34 |
| KXG27318 | Sorghum | plastid | 55.72 | 54.11 |
| Zm00001d026510_P001 | Maize | nucleus | 54.73 | 52.88 |
| Zm00001d001982_P001 | Maize | nucleus | 54.73 | 52.88 |
| CDY30379 | Canola | cytosol | 14.43 | 46.77 |
| GSMUA_Achr11P... | Banana | nucleus | 35.32 | 44.94 |
| AT2G43060.1 | Thale cress | nucleus | 29.85 | 38.46 |
| Bra037738.1-P | Field mustard | nucleus | 29.35 | 37.34 |
| CDY56346 | Canola | nucleus | 23.88 | 36.09 |
| PGSC0003DMT400014179 | Potato | mitochondrion | 22.89 | 35.94 |
| CDY53659 | Canola | nucleus | 27.36 | 35.26 |
| CDY55504 | Canola | nucleus | 27.36 | 35.03 |
| Bra004740.1-P | Field mustard | nucleus | 27.36 | 35.03 |
| Solyc12g042010.1.1 | Tomato | mitochondrion | 20.9 | 33.07 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G499000.1 | EnsemblPlantsGene:TraesCS2A01G499000 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009741 |
| GO:GO:0009826 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0040007 | PANTHER:PTHR33124 |
| PANTHER:PTHR33124:SF8 | SEG:seg | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr2A:+:728941455..728942060
Molecular Weight (calculated)
21174.6 Da
IEP (calculated)
12.353
GRAVY (calculated)
-0.130
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAKGATESS NPNHVVASVP SAAVASASAP TKRMLAFHFL RALSRIHGAA GPARRRTRTI RRAAYSSMAR ATGPHRAWSR ALLLQAQARA RRSRAETSRR
101: AAVLVRRRVV AGPAAAAPAR VALAPVVGQP SSAAARAALV PPAPPARQAG EPARSDALRR LVPGGAGMEY CSLLEETADY VRCLRAQVQL MQGLADLFSC
201: Q
101: AAVLVRRRVV AGPAAAAPAR VALAPVVGQP SSAAARAALV PPAPPARQAG EPARSDALRR LVPGGAGMEY CSLLEETADY VRCLRAQVQL MQGLADLFSC
201: Q
001: MASADKLINT DVPEKDVFAF HFLQSLSNLR KQNPFDTPDQ KNYRVRKIKK AAYVSMARAA GGSSRLWSRA LLRRADKDDN KIVRFSRRKW KISSKRRRSN
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK
Arabidopsis Description
IBH1Transcription factor IBH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.