Factsheet for Bra004740.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003791.1-P
Bra003797.1-P
Bra008154.1-P
Bra009824.1-P
Bra011540.1-P
Bra014972.1-P	nucleus
Bra015898.1-P
Bra015906.1-P
Bra018117.1-P
Bra018461.1-P	nucleus
Bra020490.1-P
Bra023745.1-P
Bra023746.1-P
Bra025358.1-P	nucleus
Bra028335.1-P	nucleus
Bra028443.1-P
Bra031700.1-P	nucleus
Bra033063.1-P	nucleus
Bra034165.1-P
Bra034636.1-P
Bra034866.1-P
Bra036025.1-P
Bra036536.1-P
Bra038336.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43060.1	Bra018461.1-P	AT1G10120.1	23161888
AT2G43060.1	Bra031700.1-P	AT1G10120.1	23161888
AT2G43060.1	Bra018461.1-P	AT1G10120.1	23161888
AT2G43060.1	Bra031700.1-P	AT1G10120.1	23161888
AT2G43060.1	Bra038336.1-P	AT1G68920.1	23161888
AT2G43060.1	Bra038336.1-P	AT1G68920.1	23161888
AT2G43060.1	Bra003797.1-P	AT1G74500.1	21798944
AT2G43060.1	Bra008154.1-P	AT1G74500.1	21798944
AT2G43060.1	Bra015906.1-P	AT1G74500.1	21798944
AT2G43060.1	Bra003791.1-P	AT1G74660.1	23161888
AT2G43060.1	Bra015898.1-P	AT1G74660.1	23161888
AT2G43060.1	Bra034165.1-P	AT3G11100.1	23161888
AT2G43060.1	Bra034866.1-P	AT3G11100.1	23161888
AT2G43060.1	Bra023745.1-P	AT3G23240.1	23161888
AT2G43060.1	Bra023746.1-P	AT3G23240.1	23161888
AT2G43060.1	Bra014972.1-P	AT3G23690.1	23161888
AT2G43060.1	Bra028335.1-P	AT3G23690.1	23161888
AT2G43060.1	Bra014972.1-P	AT3G23690.1	23161888
AT2G43060.1	Bra028335.1-P	AT3G23690.1	23161888
AT2G43060.1	Bra025358.1-P	AT3G28857.1	23161888
AT2G43060.1	Bra033063.1-P	AT3G28857.1	23161888
AT2G43060.1	Bra025358.1-P	AT3G28857.1	23161888
AT2G43060.1	Bra033063.1-P	AT3G28857.1	23161888
AT2G43060.1	Bra018117.1-P	AT3G47710.1	23161888
AT2G43060.1	Bra036025.1-P	AT3G49760.1	23161888
AT2G43060.1	Bra011540.1-P	AT4G34530.1	21798944
AT2G43060.1	Bra034636.1-P	AT4G34530.1	21798944
AT2G43060.1	Bra009824.1-P	AT5G25190.1	23161888
AT2G43060.1	Bra020490.1-P	AT5G25190.1	23161888
AT2G43060.1	Bra036536.1-P	AT5G25190.1	23161888
AT2G43060.1	Bra028443.1-P	AT5G39860.1	23161888

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55504	Canola	nucleus	100.0	100.0
Bra037738.1-P	Field mustard	nucleus	80.89	80.38
AT2G43060.1	Thale cress	nucleus	78.34	78.85
GSMUA_Achr11P...	Banana	nucleus	35.67	35.44
PGSC0003DMT400014179	Potato	mitochondrion	28.66	35.16
Solyc12g042010.1.1	Tomato	mitochondrion	27.39	33.86
Os04t0660100-01	Rice	cytosol	38.22	29.7
KXG27318	Sorghum	plastid	38.22	28.99
Zm00001d001982_P001	Maize	nucleus	36.94	27.88
Zm00001d026510_P001	Maize	nucleus	36.94	27.88
TraesCS2B01G527100.1	Wheat	nucleus, plastid	35.67	27.86
TraesCS2D01G499200.1	Wheat	nucleus, plastid	35.03	27.5
TraesCS2A01G499000.1	Wheat	plastid	35.03	27.36
HORVU2Hr1G111110.2	Barley	mitochondrion	33.76	25.85

Protein Annotations

EnsemblPlants:Bra004740.1	EnsemblPlants:Bra004740.1-P	EnsemblPlantsGene:Bra004740	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0043565	GO:GO:0046983	PANTHER:PTHR33124	PANTHER:PTHR33124:SF31
SEG:seg	UniParc:UPI0002547A7D	UniProt:M4CKK5	MapMan:15.5.32	:	:

Description

AT2G43060 (E=7e-051) | transcription factor

Coordinates

chrA05:+:1597325..1597798

Molecular Weight (calculated)

17983.9 Da

IEP (calculated)

11.250

GRAVY (calculated)

-0.767

Length

157 amino acids

Sequence
(BLAST)

001: MASADKPINT DVPEKDVFTL HFLQSLSNLR RQNTFNSPEK TNDRVKKIKK AAYVSMARAA GGTNRLWSRA LLRRAAKENS KVVRFPRRKK RVTCLRRRRS
101: NRRDPVEEEE AERLRNLVPG GGGMETSKLM EETAHYIKCL SMQVKVMQCL VDGLAPK

Best Arabidopsis Sequence Match ( AT2G43060.1 )
(BLAST)

001: MASADKLINT DVPEKDVFAF HFLQSLSNLR KQNPFDTPDQ KNYRVRKIKK AAYVSMARAA GGSSRLWSRA LLRRADKDDN KIVRFSRRKW KISSKRRRSN
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK

Arabidopsis Description

IBH1Transcription factor IBH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.