Factsheet for Bra015906.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004740.1-P
Bra004879.1-P
Bra006453.1-P
Bra013840.1-P
Bra019205.1-P
Bra037738.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74500.1	Bra004740.1-P	AT2G43060.1	21798944
AT1G74500.1	Bra037738.1-P	AT2G43060.1	21798944
AT1G74500.1	Bra004879.1-P	AT2G44950.1	21798944
AT1G74500.1	Bra040332.1-P	AT2G44950.1	21798944
AT1G74500.1	Bra006453.1-P	AT4G24840.1	21798944
AT1G74500.1	Bra013840.1-P	AT4G24840.1	21798944
AT1G74500.1	Bra019205.1-P	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96550	Canola	cytosol, mitochondrion, nucleus, plastid	100.0	100.0
CDX73095	Canola	cytosol, mitochondrion, nucleus, plastid	98.89	98.89
AT1G74500.1	Thale cress	nucleus	95.56	92.47
Bra003797.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	93.33	90.32
Bra008154.1-P	Field mustard	nucleus	92.22	89.25
Solyc06g070910.2.1	Tomato	nucleus	82.22	80.43
Bra016299.1-P	Field mustard	nucleus	80.0	76.6
Bra024672.1-P	Field mustard	nucleus	80.0	75.79
Bra012435.1-P	Field mustard	nucleus	78.89	75.53
Bra018117.1-P	Field mustard	nucleus	76.67	74.19
Bra028443.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	68.89	67.39
Bra033063.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	68.89	67.39
Bra025358.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	67.78	66.3
Bra023508.1-P	Field mustard	mitochondrion	66.67	64.52
Bra008716.1-P	Field mustard	mitochondrion, plastid	65.56	62.77
Bra006286.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	63.33	60.64

Protein Annotations

EnsemblPlants:Bra015906.1	EnsemblPlants:Bra015906.1-P	EnsemblPlantsGene:Bra015906	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF172	PFAM:PF00010	PFscan:PS50888	SEG:seg
SUPFAM:SSF47459	UniParc:UPI0000E649FC	UniProt:M4DHC9	MapMan:15.5.32	:	:

Description

AT1G74500 (E=5e-034) | bHLH family protein

Coordinates

chrA07:-:20279583..20279964

Molecular Weight (calculated)

10280.2 Da

IEP (calculated)

9.398

GRAVY (calculated)

-0.663

Length

90 amino acids

Sequence
(BLAST)

1: MSGRRSRSRQ SSGISEDQIN DLIIKLQQLL PELRNSRRSD KVSASRVLQE TCNYIRNLHR EVDDLSERLS ELLANTDTAQ AALIRSLLTQ

Best Arabidopsis Sequence Match ( AT1G74500.1 )
(BLAST)

1: MSGRRSRSRQ SSGTSRISED QINDLIIKLQ QLLPELRDSR RSDKVSAARV LQDTCNYIRN LHREVDDLSE RLSELLANSD TAQAALIRSL LTQ

Arabidopsis Description

PRE3Transcription factor PRE3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA64]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.