Factsheet for Bra023508.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85562	Canola	mitochondrion	100.0	100.0
CDY68961	Canola	mitochondrion	98.92	98.92
CDX91006	Canola	mitochondrion	98.92	98.92
Bra008716.1-P	Field mustard	mitochondrion, plastid	98.92	97.87
Bra006286.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	94.62	93.62
AT5G15160.1	Thale cress	mitochondrion	93.55	92.55
KRH45881	Soybean	mitochondrion	73.12	73.12
Bra024672.1-P	Field mustard	nucleus	73.12	71.58
Bra016299.1-P	Field mustard	nucleus	72.04	71.28
KRG99125	Soybean	cytosol, mitochondrion, nucleus	70.97	70.97
Bra028443.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	69.89	70.65
Bra012435.1-P	Field mustard	nucleus	70.97	70.21
KRH69304	Soybean	mitochondrion	69.89	69.89
KRH74825	Soybean	mitochondrion	68.82	68.82
Bra025358.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	67.74	68.48
Bra033063.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	67.74	68.48
Bra015906.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	64.52	66.67
Bra018117.1-P	Field mustard	nucleus	65.59	65.59
Bra003797.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	63.44	63.44
Bra008154.1-P	Field mustard	nucleus	60.22	60.22

Protein Annotations

EnsemblPlants:Bra023508.1	EnsemblPlants:Bra023508.1-P	EnsemblPlantsGene:Bra023508	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF299	PFAM:PF00010	PFscan:PS50888	SEG:seg
SUPFAM:SSF47459	UniParc:UPI00018C69EF	UniProt:M4E405	MapMan:15.5.32	:	:

Description

AT5G15160 (E=8e-035) | bHLH family protein

Coordinates

chrA02:-:3695752..3696698

Molecular Weight (calculated)

10541.3 Da

IEP (calculated)

9.363

GRAVY (calculated)

-0.760

Length

93 amino acids

Sequence
(BLAST)

1: MSSRRSRQAS SSSRISDDQI TDLISKLRQS IPEIRQNRRS STVSASKVLQ ETCNYIRNLH KEADDLSDRL SQLLETIDPN SPQAAIIRSL INE

Best Arabidopsis Sequence Match ( AT5G15160.1 )
(BLAST)

1: MSSSRRSRQA SSSSRISDDQ ITDLISKLRQ SIPEIRQNRR SNTVSASKVL QETCNYIRNL NKEADDLSDR LTQLLESIDP NSPQAAVIRS LING

Arabidopsis Description

PRE2Transcription factor PRE2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.