CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69304	Soybean	mitochondrion	98.92	98.92
KRH45881	Soybean	mitochondrion	91.4	91.4
KRG99125	Soybean	cytosol, mitochondrion, nucleus	86.02	86.02
KRH63380	Soybean	nucleus	78.49	79.35
KRG93518	Soybean	mitochondrion	68.82	70.33
KRH18488	Soybean	mitochondrion	68.82	70.33
Bra023508.1-P	Field mustard	mitochondrion	68.82	68.82
CDX85562	Canola	mitochondrion	68.82	68.82
KRH40108	Soybean	cytosol, mitochondrion, nucleus, plastid	67.74	68.48
KRH01162	Soybean	cytosol, mitochondrion, nucleus, plastid	67.74	68.48
CDX91006	Canola	mitochondrion	67.74	67.74
CDY68961	Canola	mitochondrion	67.74	67.74
CDX69545	Canola	mitochondrion, plastid	67.74	67.02
Bra008716.1-P	Field mustard	mitochondrion, plastid	67.74	67.02
CDX85055	Canola	mitochondrion, plastid	66.67	65.96
AT5G15160.1	Thale cress	mitochondrion	65.59	64.89
CDX78615	Canola	mitochondrion	65.59	64.89
Bra006286.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	65.59	64.89
KRH54526	Soybean	endoplasmic reticulum, vacuole	74.19	47.26
KRH46796	Soybean	nucleus	40.86	41.76
KRH54533	Soybean	nucleus	36.56	37.36
KRH63371	Soybean	nucleus	35.48	35.87

Protein Annotations

EntrezGene:100816720	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02000075	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G044800
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1J5N3
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRH74825	ProteinID:KRH74825	ProteinID:KRH74825.1	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF172	SUPFAM:SSF47459	UniParc:UPI0002337823	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:4983755..4985423

Molecular Weight (calculated)

10373.3 Da

IEP (calculated)

9.334

GRAVY (calculated)

-0.505

Length

93 amino acids

Sequence
(BLAST)

1: MSSRRSRSRQ SGASAEITDA QITDLVSKLQ QLIPELRARR SDKVSSAKVL QETCNYIKNL HREVDDLSDR LSELLANTDS NSAQAAIIRS LLM

Best Arabidopsis Sequence Match ( AT1G26945.1 )
(BLAST)

1: MSSRRSSRSR QSGSSRISDD QISDLVSKLQ HLIPELRRRR SDKVSASKVL QETCNYIRNL HREVDDLSDR LSELLASTDD NSAEAAIIRS LLNY

Arabidopsis Description

PRE6Transcription factor PRE6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW32]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.