CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
vacuole 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54533	Soybean	nucleus	85.87	86.81
KRH46796	Soybean	nucleus	58.7	59.34
VIT_17s0000g05950.t01	Wine grape	nucleus	52.17	53.33
TraesCS7D01G187000.1	Wheat	nucleus	42.39	44.32
TraesCS7B01G090500.1	Wheat	nucleus	42.39	44.32
TraesCS7A01G185300.1	Wheat	nucleus	42.39	44.32
HORVU7Hr1G038060.1	Barley	cytosol, plastid	41.3	44.19
Zm00001d044839_P001	Maize	cytosol	41.3	43.68
TraesCS6A01G306200.1	Wheat	nucleus	41.3	43.18
EER88111	Sorghum	nucleus	40.22	43.02
Os06t0226500-01	Rice	cytosol, mitochondrion, nucleus, plastid	40.22	42.53
GSMUA_Achr5P23360_001	Banana	nucleus	39.13	42.35
GSMUA_Achr6P02760_001	Banana	plastid	39.13	42.35
TraesCS4B01G288000.1	Wheat	nucleus	39.13	42.35
GSMUA_Achr7P17970_001	Banana	nucleus	39.13	42.35
GSMUA_Achr2P07400_001	Banana	nucleus	39.13	41.86
Zm00001d018056_P001	Maize	cytosol	40.22	41.57
GSMUA_Achr3P19950_001	Banana	cytosol, mitochondrion, nucleus, plastid	38.04	41.18
GSMUA_Achr1P21650_001	Banana	nucleus	38.04	41.18
EES05528	Sorghum	cytosol, mitochondrion, nucleus, plastid	40.22	41.11
EER95420	Sorghum	nucleus	38.04	40.7
Zm00001d027859_P001	Maize	nucleus	38.04	40.7
GSMUA_Achr2P14930_001	Banana	nucleus	38.04	40.7
Os03t0171700-01	Rice	nucleus	40.22	40.66
GSMUA_Achr10P...	Banana	nucleus	39.13	40.45
GSMUA_Achr9P09010_001	Banana	nucleus	36.96	40.0
GSMUA_Achr6P35370_001	Banana	nucleus	36.96	40.0
GSMUA_Achr5P17560_001	Banana	nucleus	36.96	40.0
TraesCS4A01G016000.1	Wheat	nucleus	36.96	40.0
TraesCS6D01G285300.1	Wheat	nucleus	38.04	39.77
TraesCS6B01G334600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	38.04	39.77
Os02t0747900-01	Rice	cytosol, mitochondrion, nucleus, plastid	38.04	39.77
GSMUA_Achr8P17980_001	Banana	nucleus	36.96	39.08
Zm00001d048309_P001	Maize	nucleus	36.96	39.08
Zm00001d052254_P001	Maize	cytosol	38.04	38.89
TraesCS4D01G286800.1	Wheat	nucleus	35.87	38.82
GSMUA_Achr4P24120_001	Banana	nucleus	35.87	38.82
GSMUA_Achr6P30660_001	Banana	nucleus	35.87	38.82
Os10t0403800-00	Rice	nucleus	36.96	38.64
KRH63380	Soybean	nucleus	38.04	38.04
GSMUA_Achr7P11580_001	Banana	nucleus	36.96	37.36
KRH74825	Soybean	mitochondrion	35.87	35.48
KRH45881	Soybean	mitochondrion	35.87	35.48
KRH69304	Soybean	mitochondrion	34.78	34.41
KRG99125	Soybean	cytosol, mitochondrion, nucleus	34.78	34.41
GSMUA_Achr10P...	Banana	nucleus	30.43	32.94
KRH01162	Soybean	cytosol, mitochondrion, nucleus, plastid	32.61	32.61
KRH40108	Soybean	cytosol, mitochondrion, nucleus, plastid	32.61	32.61
KRG93518	Soybean	mitochondrion	31.52	31.87
KRH18488	Soybean	mitochondrion	31.52	31.87
GSMUA_Achr11P...	Banana	cytosol	25.0	30.67
KRH54526	Soybean	endoplasmic reticulum, vacuole	39.13	24.66
HORVU4Hr1G075340.2	Barley	plastid	28.26	20.16

Protein Annotations

EMBL:ACUP02002669	EnsemblPlants:KRH63371	EnsemblPlantsGene:GLYMA_04G171600	EntrezGene:100790746	Gene3D:4.10.280.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR036638	ncoils:Coil
PANTHER:PTHR38546	ProteinID:KRH63370.1	ProteinID:KRH63371	ProteinID:KRH63371.1	SEG:seg	SUPFAM:SSF47459
UniParc:UPI0002339635	UniProt:I1JWW8	MapMan:15.5.32	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:42858459..42860031

Molecular Weight (calculated)

10609.8 Da

IEP (calculated)

7.367

GRAVY (calculated)

-0.583

Length

92 amino acids

Sequence
(BLAST)

1: MPGQRNSRTS KFTESEINDL MLRLQALLPQ LNQTSNSRAS SVSVMKIMKE TCSHITRLQK EVKDLGERLV QLMDSVDLSD IDEERFTRLL QQ

Best Arabidopsis Sequence Match ( AT3G47710.1 )
(BLAST)

1: MSSRKSRSRQ TGASMITDEQ INDLVLQLHR LLPELANNRR SGKVSASRVL QETCSYIRNL SKEVDDLSER LSQLLESTDS AQAALIRSLL MQ

Arabidopsis Description

PRE4Transcription factor PRE4 [Source:UniProtKB/Swiss-Prot;Acc:F4JCN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.