Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G286800.1 | Wheat | nucleus | 96.47 | 96.47 |
| TraesCS4A01G016000.1 | Wheat | nucleus | 95.29 | 95.29 |
| EER95420 | Sorghum | nucleus | 88.24 | 87.21 |
| Zm00001d027859_P001 | Maize | nucleus | 88.24 | 87.21 |
| Os03t0171700-01 | Rice | nucleus | 91.76 | 85.71 |
| Zm00001d048309_P001 | Maize | nucleus | 85.88 | 83.91 |
| TraesCS6B01G334600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 72.94 | 70.45 |
| TraesCS7B01G090500.1 | Wheat | nucleus | 71.76 | 69.32 |
| TraesCS4B01G287900.1 | Wheat | nucleus | 65.88 | 60.87 |
| VIT_17s0000g05950.t01 | Wine grape | nucleus | 57.65 | 54.44 |
| TraesCS2B01G550800.1 | Wheat | mitochondrion | 58.82 | 52.08 |
| TraesCS2B01G550900.1 | Wheat | nucleus | 56.47 | 50.0 |
| HORVU4Hr1G075340.2 | Barley | plastid | 65.88 | 43.41 |
| KRH46796 | Soybean | nucleus | 45.88 | 42.86 |
| KRH54533 | Soybean | nucleus | 44.71 | 41.76 |
| KRH63371 | Soybean | nucleus | 42.35 | 39.13 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G288000.1 | EnsemblPlantsGene:TraesCS4B01G288000 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF84 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SUPFAM:SSF47459 |
| MapMan:15.5.32 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:573091561..573092022
Molecular Weight (calculated)
9620.4 Da
IEP (calculated)
7.365
GRAVY (calculated)
-0.632
Length
85 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSRRGRITD EEINELISKL QALLPESSRR RSASRSSASK LLKETCGYIK SLHQEVDDLS DRLSELMSTL DESSPQAEII RSLLR
1: MSSSRRSRQA SSSSRISDDQ ITDLISKLRQ SIPEIRQNRR SNTVSASKVL QETCNYIRNL NKEADDLSDR LTQLLESIDP NSPQAAVIRS LING
Arabidopsis Description
PRE2Transcription factor PRE2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.