Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95420 | Sorghum | nucleus | 56.67 | 59.3 |
| Zm00001d027859_P001 | Maize | nucleus | 56.67 | 59.3 |
| GSMUA_Achr2P14930_001 | Banana | nucleus | 55.56 | 58.14 |
| TraesCS4B01G288000.1 | Wheat | nucleus | 54.44 | 57.65 |
| Zm00001d048309_P001 | Maize | nucleus | 55.56 | 57.47 |
| Os06t0226500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 55.56 | 57.47 |
| GSMUA_Achr6P02760_001 | Banana | plastid | 53.33 | 56.47 |
| GSMUA_Achr10P... | Banana | nucleus | 55.56 | 56.18 |
| Zm00001d018056_P001 | Maize | cytosol | 55.56 | 56.18 |
| Os03t0171700-01 | Rice | nucleus | 56.67 | 56.04 |
| HORVU7Hr1G038060.1 | Barley | cytosol, plastid | 53.33 | 55.81 |
| GSMUA_Achr2P07400_001 | Banana | nucleus | 53.33 | 55.81 |
| TraesCS7D01G187000.1 | Wheat | nucleus | 54.44 | 55.68 |
| TraesCS7B01G090500.1 | Wheat | nucleus | 54.44 | 55.68 |
| TraesCS7A01G185300.1 | Wheat | nucleus | 54.44 | 55.68 |
| Os10t0403800-00 | Rice | nucleus | 54.44 | 55.68 |
| EES05528 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 55.56 | 55.56 |
| TraesCS4D01G286800.1 | Wheat | nucleus | 52.22 | 55.29 |
| GSMUA_Achr1P21650_001 | Banana | nucleus | 52.22 | 55.29 |
| TraesCS4A01G016000.1 | Wheat | nucleus | 52.22 | 55.29 |
| Zm00001d044839_P001 | Maize | cytosol | 53.33 | 55.17 |
| KRH54533 | Soybean | nucleus | 55.56 | 54.95 |
| EER88111 | Sorghum | nucleus | 52.22 | 54.65 |
| TraesCS6A01G306200.1 | Wheat | nucleus | 53.33 | 54.55 |
| GSMUA_Achr5P17560_001 | Banana | nucleus | 51.11 | 54.12 |
| GSMUA_Achr8P17980_001 | Banana | nucleus | 52.22 | 54.02 |
| TraesCS6D01G285300.1 | Wheat | nucleus | 52.22 | 53.41 |
| TraesCS6B01G334600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 52.22 | 53.41 |
| Os02t0747900-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 52.22 | 53.41 |
| GSMUA_Achr7P17970_001 | Banana | nucleus | 50.0 | 52.94 |
| Zm00001d052254_P001 | Maize | cytosol | 52.22 | 52.22 |
| KRH63371 | Soybean | nucleus | 53.33 | 52.17 |
| GSMUA_Achr5P23360_001 | Banana | nucleus | 48.89 | 51.76 |
| GSMUA_Achr4P24120_001 | Banana | nucleus | 48.89 | 51.76 |
| GSMUA_Achr9P09010_001 | Banana | nucleus | 48.89 | 51.76 |
| GSMUA_Achr7P11580_001 | Banana | nucleus | 52.22 | 51.65 |
| VIT_17s0000g05900.t01 | Wine grape | mitochondrion | 52.22 | 51.65 |
| VIT_14s0108g00420.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 51.11 | 51.11 |
| KRH46796 | Soybean | nucleus | 51.11 | 50.55 |
| VIT_01s0026g02030.t01 | Wine grape | mitochondrion | 51.11 | 50.0 |
| GSMUA_Achr3P19950_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 46.67 | 49.41 |
| GSMUA_Achr10P... | Banana | nucleus | 46.67 | 49.41 |
| GSMUA_Achr6P35370_001 | Banana | nucleus | 45.56 | 48.24 |
| GSMUA_Achr6P30660_001 | Banana | nucleus | 43.33 | 45.88 |
| GSMUA_Achr11P... | Banana | cytosol | 35.56 | 42.67 |
| HORVU4Hr1G075340.2 | Barley | plastid | 41.11 | 28.68 |
Protein Annotations
| EntrezGene:100253530 | wikigene:100253530 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:CBI15246 | ProteinID:CBI15246.3 |
| ncoils:Coil | UniProt:D7SID5 | EMBL:FN594950 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EntrezGene:LOC100253530 | wikigene:LOC100253530 |
| PFAM:PF00010 | PFscan:PS50826 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF172 | InterPro:Run_dom |
| SUPFAM:SSF47459 | UniParc:UPI00015CC700 | ArrayExpress:VIT_17s0000g05950 | EnsemblPlantsGene:VIT_17s0000g05950 | EnsemblPlants:VIT_17s0000g05950.t01 | RefSeq:XP_002268291 |
| RefSeq:XP_002268291.1 | InterPro:bHLH_dom | : | : | : | : |
Description
No Description!
Coordinates
chr17:+:6493136..6493937
Molecular Weight (calculated)
10329.3 Da
IEP (calculated)
9.365
GRAVY (calculated)
-0.571
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MSTQRARASR VTDDEINDLI LKLQALLPHS NQRRTSTGAS AWRILKETCS YIKRLHREVG DLSERLSQLL DSLDNINGVE VEQLRSLLQR
1: MSNRRSRQTS NASRISDDQM IDLVSKLRQF LPEIHERRRS DKVSASKVLQ ETCNYIRKLH REVDNLSDRL SQLLDSVDED SPEAAVIRSL LM
Arabidopsis Description
PRE5Transcription factor PRE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.