Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P09010_001 | Banana | nucleus | 88.24 | 88.24 |
| GSMUA_Achr6P02760_001 | Banana | plastid | 81.18 | 81.18 |
| GSMUA_Achr7P17970_001 | Banana | nucleus | 80.0 | 80.0 |
| GSMUA_Achr5P23360_001 | Banana | nucleus | 80.0 | 80.0 |
| GSMUA_Achr6P30660_001 | Banana | nucleus | 76.47 | 76.47 |
| GSMUA_Achr7P11580_001 | Banana | nucleus | 80.0 | 74.73 |
| GSMUA_Achr2P07400_001 | Banana | nucleus | 75.29 | 74.42 |
| GSMUA_Achr10P... | Banana | nucleus | 77.65 | 74.16 |
| GSMUA_Achr3P19950_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 74.12 | 74.12 |
| GSMUA_Achr5P17560_001 | Banana | nucleus | 74.12 | 74.12 |
| GSMUA_Achr1P21650_001 | Banana | nucleus | 74.12 | 74.12 |
| GSMUA_Achr8P17980_001 | Banana | nucleus | 75.29 | 73.56 |
| GSMUA_Achr4P24120_001 | Banana | nucleus | 71.76 | 71.76 |
| GSMUA_Achr2P14930_001 | Banana | nucleus | 69.41 | 68.6 |
| GSMUA_Achr10P... | Banana | nucleus | 65.88 | 65.88 |
| GSMUA_Achr2P14910_001 | Banana | mitochondrion | 67.06 | 61.96 |
| GSMUA_Achr3P21440_001 | Banana | mitochondrion | 64.71 | 59.78 |
| GSMUA_Achr2P07410_001 | Banana | nucleus | 64.71 | 59.14 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 63.53 | 58.06 |
| GSMUA_Achr10P... | Banana | mitochondrion | 62.35 | 57.61 |
| GSMUA_Achr11P... | Banana | cytosol | 49.41 | 56.0 |
| GSMUA_Achr3P01580_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 57.65 | 53.26 |
| GSMUA_Achr4P00530_001 | Banana | mitochondrion | 55.29 | 51.09 |
| VIT_17s0000g05950.t01 | Wine grape | nucleus | 48.24 | 45.56 |
| KRH46796 | Soybean | nucleus | 41.18 | 38.46 |
| KRH54533 | Soybean | nucleus | 40.0 | 37.36 |
| KRH63371 | Soybean | nucleus | 40.0 | 36.96 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P35370_001 | EnsemblPlants:GSMUA_Achr6T35370_001 | EnsemblPlantsGene:GSMUA_Achr6G35370_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF179 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SUPFAM:SSF47459 | UniParc:UPI000294A1A7 | UniProt:M0TCY0 | MapMan:15.5.32 | : | : |
Description
Transcription factor bHLH135 [Source:GMGC_GENE;Acc:GSMUA_Achr6G35370_001]
Coordinates
chr6:+:33617748..33618114
Molecular Weight (calculated)
9744.7 Da
IEP (calculated)
8.517
GRAVY (calculated)
-0.589
Length
85 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSRRSRISE EEIAELLSKL QSLLPEARRR GTSRASSAKL LKETCNYIKS LHREVDDLSD RLSEMMATMD MDSAQAEIIR SLFRP
1: MSSRRSSRSR QSGSSRISDD QISDLVSKLQ HLIPELRRRR SDKVSASKVL QETCNYIRNL HREVDDLSDR LSELLASTDD NSAEAAIIRS LLNY
Arabidopsis Description
PRE6Transcription factor PRE6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW32]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.