Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr2P07410_001 | Banana | nucleus | 77.17 | 76.34 |
TraesCS4B01G287900.1 | Wheat | nucleus | 76.09 | 76.09 |
GSMUA_Achr2P14910_001 | Banana | mitochondrion | 76.09 | 76.09 |
TraesCS4D01G286600.1 | Wheat | nucleus | 75.0 | 75.0 |
TraesCS4A01G016300.1 | Wheat | nucleus | 75.0 | 75.0 |
Os03t0171300-01 | Rice | nucleus | 73.91 | 73.91 |
GSMUA_AchrUn_... | Banana | mitochondrion | 73.91 | 73.12 |
GSMUA_Achr10P... | Banana | mitochondrion | 72.83 | 72.83 |
GSMUA_Achr3P01580_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 72.83 | 72.83 |
OQU93146 | Sorghum | nucleus | 71.74 | 71.74 |
Zm00001d027855_P001 | Maize | nucleus | 70.65 | 70.65 |
Os10t0404300-00 | Rice | plastid | 68.48 | 69.23 |
GSMUA_Achr6P02760_001 | Banana | plastid | 63.04 | 68.24 |
EER94274 | Sorghum | mitochondrion | 69.57 | 67.37 |
GSMUA_Achr7P17970_001 | Banana | nucleus | 61.96 | 67.06 |
GSMUA_Achr9P09010_001 | Banana | nucleus | 61.96 | 67.06 |
GSMUA_Achr5P23360_001 | Banana | nucleus | 60.87 | 65.88 |
GSMUA_Achr1P21650_001 | Banana | nucleus | 60.87 | 65.88 |
GSMUA_Achr10P... | Banana | nucleus | 63.04 | 65.17 |
GSMUA_Achr6P35370_001 | Banana | nucleus | 59.78 | 64.71 |
GSMUA_Achr8P17980_001 | Banana | nucleus | 60.87 | 64.37 |
GSMUA_Achr4P00530_001 | Banana | mitochondrion | 64.13 | 64.13 |
GSMUA_Achr2P07400_001 | Banana | nucleus | 58.7 | 62.79 |
GSMUA_Achr5P17560_001 | Banana | nucleus | 57.61 | 62.35 |
GSMUA_Achr4P24120_001 | Banana | nucleus | 57.61 | 62.35 |
GSMUA_Achr7P11580_001 | Banana | nucleus | 60.87 | 61.54 |
GSMUA_Achr6P30660_001 | Banana | nucleus | 56.52 | 61.18 |
GSMUA_Achr2P14930_001 | Banana | nucleus | 56.52 | 60.47 |
GSMUA_Achr3P19950_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 53.26 | 57.65 |
GSMUA_Achr10P... | Banana | nucleus | 48.91 | 52.94 |
GSMUA_Achr11P... | Banana | cytosol | 39.13 | 48.0 |
HORVU4Hr1G075250.41 | Barley | plastid | 70.65 | 47.79 |
Protein Annotations
EnsemblPlants:GSMUA_Achr3P21440_001 | EnsemblPlants:GSMUA_Achr3T21440_001 | EnsemblPlantsGene:GSMUA_Achr3G21440_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
ncoils:Coil | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF172 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
SUPFAM:SSF47459 | UniParc:UPI00029625F2 | UniProt:M0SGL0 | MapMan:15.5.32 | : | : |
Description
Transcription factor bHLH135 [Source:GMGC_GENE;Acc:GSMUA_Achr3G21440_001]
Coordinates
chr3:-:22413551..22413905
Molecular Weight (calculated)
10391.4 Da
IEP (calculated)
9.648
GRAVY (calculated)
-0.564
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSRRSRLRQ SGSTRITDEQ INELISKLQS VLPEARRGGN DRVSAAKVLQ ETCSHIRRLH REVDDLSERL SELLDSADLN SAQAAFIRSL LM
1: MSSRKSRSRQ TGASMITDEQ INDLVLQLHR LLPELANNRR SGKVSASRVL QETCSYIRNL SKEVDDLSER LSQLLESTDS AQAALIRSLL MQ
Arabidopsis Description
PRE4Transcription factor PRE4 [Source:UniProtKB/Swiss-Prot;Acc:F4JCN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.