Factsheet for HORVU4Hr1G075250.41

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G016300.1	Wheat	nucleus	64.71	95.65
TraesCS4D01G286600.1	Wheat	nucleus	64.71	95.65
TraesCS4B01G287900.1	Wheat	nucleus	63.97	94.57
Os03t0171300-01	Rice	nucleus	62.5	92.39
OQU93146	Sorghum	nucleus	58.82	86.96
Zm00001d027855_P001	Maize	nucleus	58.09	85.87
GSMUA_Achr2P14910_001	Banana	mitochondrion	49.26	72.83
GSMUA_Achr3P01580_001	Banana	cytosol, mitochondrion, nucleus, plastid	48.53	71.74
GSMUA_Achr3P21440_001	Banana	mitochondrion	47.79	70.65
GSMUA_Achr10P...	Banana	mitochondrion	46.32	68.48
HORVU2Hr1G115240.2	Barley	mitochondrion	41.18	57.73
HORVU7Hr1G038060.1	Barley	cytosol, plastid	31.62	50.0
HORVU4Hr1G075340.2	Barley	plastid	30.15	31.78

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A287PPH8	ncoils:Coil	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0040007	GO:GO:0046983	GO:GO:0080113
InterPro:HLH_DNA-bd_sf	EnsemblPlantsGene:HORVU4Hr1G075250	EnsemblPlants:HORVU4Hr1G075250.41	InterPro:IPR011598	InterPro:IPR036638	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF283	SUPFAM:SSF47459	UniParc:UPI000B46D68E	InterPro:bHLH_dom	SEG:seg

Description

No Description!

Coordinates

chrchr4H:+:597428409..597429729

Molecular Weight (calculated)

15183.3 Da

IEP (calculated)

10.442

GRAVY (calculated)

-0.386

Length

136 amino acids

Sequence
(BLAST)

001: IQIEPQTKPS TILASKSSLP PALHLLLFKA SSHLQRRCTS SMRLTQAPRS RSRQSGSSRI TDEQISDLVS KLQDLLPEAR LRGNDRVPSS RVLQETCTYI
101: RSLHREVDDL SERLSELLAT SDMSSAQAAI IRSLLM

Best Arabidopsis Sequence Match ( AT1G26945.1 )
(BLAST)

1: MSSRRSSRSR QSGSSRISDD QISDLVSKLQ HLIPELRRRR SDKVSASKVL QETCNYIRNL HREVDDLSDR LSELLASTDD NSAEAAIIRS LLNY

Arabidopsis Description

PRE6Transcription factor PRE6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW32]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.