Factsheet for GSMUA_Achr10P18840_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G287900.1	Wheat	nucleus	73.91	73.91
GSMUA_Achr2P07410_001	Banana	nucleus	73.91	73.12
TraesCS4D01G286600.1	Wheat	nucleus	72.83	72.83
TraesCS4A01G016300.1	Wheat	nucleus	72.83	72.83
GSMUA_Achr3P01580_001	Banana	cytosol, mitochondrion, nucleus, plastid	72.83	72.83
GSMUA_Achr3P21440_001	Banana	mitochondrion	72.83	72.83
GSMUA_Achr2P14910_001	Banana	mitochondrion	71.74	71.74
GSMUA_AchrUn_...	Banana	mitochondrion	71.74	70.97
Os03t0171300-01	Rice	nucleus	70.65	70.65
Os10t0404300-00	Rice	plastid	68.48	69.23
OQU93146	Sorghum	nucleus	67.39	67.39
EER94274	Sorghum	mitochondrion	68.48	66.32
Zm00001d027855_P001	Maize	nucleus	65.22	65.22
GSMUA_Achr9P09010_001	Banana	nucleus	59.78	64.71
GSMUA_Achr6P35370_001	Banana	nucleus	57.61	62.35
GSMUA_Achr4P00530_001	Banana	mitochondrion	60.87	60.87
GSMUA_Achr10P...	Banana	nucleus	58.7	60.67
GSMUA_Achr6P02760_001	Banana	plastid	55.43	60.0
GSMUA_Achr8P17980_001	Banana	nucleus	56.52	59.77
GSMUA_Achr7P11580_001	Banana	nucleus	58.7	59.34
GSMUA_Achr2P07400_001	Banana	nucleus	55.43	59.3
GSMUA_Achr7P17970_001	Banana	nucleus	54.35	58.82
GSMUA_Achr5P23360_001	Banana	nucleus	54.35	58.82
GSMUA_Achr5P17560_001	Banana	nucleus	54.35	58.82
GSMUA_Achr4P24120_001	Banana	nucleus	54.35	58.82
GSMUA_Achr1P21650_001	Banana	nucleus	54.35	58.82
GSMUA_Achr6P30660_001	Banana	nucleus	52.17	56.47
GSMUA_Achr2P14930_001	Banana	nucleus	51.09	54.65
GSMUA_Achr3P19950_001	Banana	cytosol, mitochondrion, nucleus, plastid	50.0	54.12
GSMUA_Achr10P...	Banana	nucleus	46.74	50.59
GSMUA_Achr11P...	Banana	cytosol	40.22	49.33
HORVU4Hr1G075250.41	Barley	plastid	68.48	46.32

Protein Annotations

EnsemblPlants:GSMUA_Achr10P18840_001	EnsemblPlants:GSMUA_Achr10T18840_001	EnsemblPlantsGene:GSMUA_Achr10G18840_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF283	PFscan:PS50888	SEG:seg	SUPFAM:SSF47459
UniParc:UPI0002958575	UniProt:M0RJF9	MapMan:15.5.32	:	:	:

Description

Transcription factor bHLH135 [Source:GMGC_GENE;Acc:GSMUA_Achr10G18840_001]

Coordinates

chr10:+:25412630..25413013

Molecular Weight (calculated)

10263.1 Da

IEP (calculated)

7.618

GRAVY (calculated)

-0.496

Length

92 amino acids

Sequence
(BLAST)

1: MSSRRSRSRQ SSSGRITDQQ IDDLMSKLQS LLHEARLGSH DRASAAKVLQ DTCSYIRSLH REVDDLSERL SELLDAAGVS SDQAAIIRSL FM

Best Arabidopsis Sequence Match ( AT3G28857.1 )
(BLAST)

1: MSNRRSRQTS NASRISDDQM IDLVSKLRQF LPEIHERRRS DKVSASKVLQ ETCNYIRKLH REVDNLSDRL SQLLDSVDED SPEAAVIRSL LM

Arabidopsis Description

PRE5Transcription factor PRE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.