Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0171300-01 | Rice | nucleus | 79.12 | 78.26 |
| EER94274 | Sorghum | mitochondrion | 81.32 | 77.89 |
| GSMUA_Achr3P01580_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 72.53 | 71.74 |
| GSMUA_Achr2P14910_001 | Banana | mitochondrion | 71.43 | 70.65 |
| GSMUA_Achr10P... | Banana | mitochondrion | 69.23 | 68.48 |
| GSMUA_Achr3P21440_001 | Banana | mitochondrion | 69.23 | 68.48 |
| Os04t0641700-00 | Rice | mitochondrion | 65.93 | 57.69 |
| Os10t0403800-00 | Rice | nucleus | 54.95 | 56.82 |
| Os03t0171700-01 | Rice | nucleus | 56.04 | 56.04 |
| Os06t0226500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 48.35 | 50.57 |
| Os11t0603000-01 | Rice | mitochondrion | 56.04 | 50.49 |
| Os02t0747900-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 47.25 | 48.86 |
Protein Annotations
| EntrezGene:107277392 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:ABB47567.1 | EMBL:AP008216 | ProteinID:BAT10759.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0040007 |
| GO:GO:0040008 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlantsGene:Os10g0404300 |
| EnsemblPlants:Os10t0404300-00 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF283 | UniProt:Q338G6 | SUPFAM:SSF47459 |
| UniParc:UPI00005E1E59 | RefSeq:XP_015614007.1 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
INCREASED LEAF INCLINATION 7Similar to predicted protein. (Os10t0404300-00)
Coordinates
chr10:+:13773717..13774369
Molecular Weight (calculated)
10034.0 Da
IEP (calculated)
9.438
GRAVY (calculated)
-0.218
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: MSRRSRSRAS SAARITDEQI GDLVSKLQAL LPEARLRSND RVPSARVLQE TCSYIRSLHR EVDDLSERLA ELLAAADVST AQAAVIRGLL M
1: MSSRRSSRSR QSGSSRISDD QISDLVSKLQ HLIPELRRRR SDKVSASKVL QETCNYIRNL HREVDDLSDR LSELLASTDD NSAEAAIIRS LLNY
Arabidopsis Description
PRE6Transcription factor PRE6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW32]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.