Factsheet for Os02t0747900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
extracellular 1
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018056_P001	Maize	cytosol	93.18	92.13
TraesCS6B01G334600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	90.91	90.91
TraesCS6A01G306200.1	Wheat	nucleus	90.91	90.91
Os06t0226500-01	Rice	cytosol, mitochondrion, nucleus, plastid	89.77	90.8
EES05528	Sorghum	cytosol, mitochondrion, nucleus, plastid	92.05	90.0
TraesCS6D01G285300.1	Wheat	nucleus	89.77	89.77
Zm00001d052254_P001	Maize	cytosol	84.09	82.22
GSMUA_Achr10P...	Banana	nucleus	82.95	82.02
GSMUA_Achr7P11580_001	Banana	nucleus	82.95	80.22
GSMUA_Achr8P17980_001	Banana	nucleus	77.27	78.16
GSMUA_Achr2P07400_001	Banana	nucleus	75.0	76.74
GSMUA_Achr1P21650_001	Banana	nucleus	73.86	76.47
GSMUA_Achr4P24120_001	Banana	nucleus	73.86	76.47
GSMUA_Achr5P17560_001	Banana	nucleus	72.73	75.29
Os10t0403800-00	Rice	nucleus	75.0	75.0
Os03t0171700-01	Rice	nucleus	76.14	73.63
GSMUA_Achr2P14930_001	Banana	nucleus	70.45	72.09
Os03t0171300-01	Rice	nucleus	55.68	53.26
VIT_17s0000g05950.t01	Wine grape	nucleus	53.41	52.22
Os10t0404300-00	Rice	plastid	48.86	47.25
Os04t0641700-00	Rice	mitochondrion	54.55	46.15
KRH46796	Soybean	nucleus	42.05	40.66
KRH54533	Soybean	nucleus	39.77	38.46
KRH63371	Soybean	nucleus	39.77	38.04
Os11t0603000-01	Rice	mitochondrion	43.18	37.62

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:4330725	ProteinID:BAD16450.1	ProteinID:BAF10032.2	ProteinID:BAS80918.1
ncoils:Coil	ProteinID:EAZ24616.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791
GO:GO:0009987	GO:GO:0040007	GO:GO:0040008	GO:GO:0046983	GO:GO:0080113	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os02g0747900	EnsemblPlants:Os02t0747900-01	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF84	UniProt:Q6YUX0	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0000358D46
RefSeq:XP_015624230.1	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

INCREASED LEAF INCLINATION 5Atypical basic helix-loop-helix protein, Control of cell elongation, Regulator of grain size and leaf angle (Os02t0747900-01)

Coordinates

chr2:-:31423943..31425239

Molecular Weight (calculated)

9905.7 Da

IEP (calculated)

9.335

GRAVY (calculated)

-0.702

Length

88 amino acids

Sequence
(BLAST)

1: MSSRRSSRGS ISEEEINELI SKLQSLLPNS RRRGSSQAST TKLLKETCNY IKSLHREVDD LSDRLSDLMA TMDHNSPGAE IIRSILRS

Best Arabidopsis Sequence Match ( AT1G26945.1 )
(BLAST)

1: MSSRRSSRSR QSGSSRISDD QISDLVSKLQ HLIPELRRRR SDKVSASKVL QETCNYIRNL HREVDDLSDR LSELLASTDD NSAEAAIIRS LLNY

Arabidopsis Description

PRE6Transcription factor PRE6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW32]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.