Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G521500.1 | Wheat | mitochondrion | 95.88 | 96.88 |
| TraesCS2B01G550800.1 | Wheat | mitochondrion | 94.85 | 95.83 |
| TraesCS2D01G523300.1 | Wheat | mitochondrion | 93.81 | 94.79 |
| TraesCS2B01G550900.1 | Wheat | nucleus | 91.75 | 92.71 |
| TraesCS2D01G523200.1 | Wheat | mitochondrion | 91.75 | 92.71 |
| Os04t0641700-00 | Rice | mitochondrion | 83.51 | 77.88 |
| Zm00001d002121_P001 | Maize | mitochondrion, plastid | 83.51 | 77.88 |
| EES12951 | Sorghum | mitochondrion, plastid | 82.47 | 76.92 |
| HORVU7Hr1G038060.1 | Barley | cytosol, plastid | 45.36 | 51.16 |
| HORVU4Hr1G075250.41 | Barley | plastid | 57.73 | 41.18 |
| HORVU4Hr1G075340.2 | Barley | plastid | 38.14 | 28.68 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009741 | GO:GO:0009826 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016049 | GO:GO:0040007 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | EnsemblPlantsGene:HORVU2Hr1G115240 |
| EnsemblPlants:HORVU2Hr1G115240.2 | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M0XIA1 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF117 | SUPFAM:SSF47459 | UniParc:UPI000295698D | InterPro:bHLH_dom | SEG:seg | : |
Description
No Description!
Coordinates
chrchr2H:-:734189508..734191115
Molecular Weight (calculated)
10414.2 Da
IEP (calculated)
6.519
GRAVY (calculated)
-0.334
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSSSRRSRT RRGGSSPSIS EEQISELLSK LQALLPESTQ AGNGAHRGSA ARVLQETCSY IRSLHREVDD LSETLAALLA SDAVTDEQAA VIRSLLM
1: MSSRKSRSRQ TGASMITDEQ INDLVLQLHR LLPELANNRR SGKVSASRVL QETCSYIRNL SKEVDDLSER LSQLLESTDS AQAALIRSLL MQ
Arabidopsis Description
PRE4Transcription factor PRE4 [Source:UniProtKB/Swiss-Prot;Acc:F4JCN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.