CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002121_P001	Maize	mitochondrion, plastid	96.15	96.15
Os04t0641700-00	Rice	mitochondrion	87.5	87.5
TraesCS2B01G550900.1	Wheat	nucleus	79.81	86.46
TraesCS2D01G523300.1	Wheat	mitochondrion	78.85	85.42
TraesCS2A01G521500.1	Wheat	mitochondrion	77.88	84.38
TraesCS2B01G550800.1	Wheat	mitochondrion	77.88	84.38
HORVU2Hr1G115240.2	Barley	mitochondrion	76.92	82.47
TraesCS2D01G523200.1	Wheat	mitochondrion	75.0	81.25
OQU93146	Sorghum	nucleus	60.58	68.48
EER94274	Sorghum	mitochondrion	58.65	64.21
EER95420	Sorghum	nucleus	50.0	60.47
EES05528	Sorghum	cytosol, mitochondrion, nucleus, plastid	50.0	57.78
EER88111	Sorghum	nucleus	44.23	53.49

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8079560	UniProt:C5Y8Z3	ncoils:Coil	EnsemblPlants:EES12951
ProteinID:EES12951	ProteinID:EES12951.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0009653	GO:GO:0009719	GO:GO:0009741	GO:GO:0009826	GO:GO:0009987	GO:GO:0016043
GO:GO:0016049	GO:GO:0040007	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF117	EnsemblPlantsGene:SORBI_3006G236600	SUPFAM:SSF47459
UniParc:UPI0001A8738F	RefSeq:XP_002448623.1	InterPro:bHLH_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:57805969..57807417

Molecular Weight (calculated)

11181.0 Da

IEP (calculated)

8.537

GRAVY (calculated)

-0.403

Length

104 amino acids

Sequence
(BLAST)

001: MSSSRRSSSR TRRAGSGSLS SSTSRSISED QISELLSKLQ ALLPESQTRN GAHRGSAARV LQDTCSYIRS LHQEVDNLSE TLAELLASAD VTSDQAAVIR
101: SLLM

Best Arabidopsis Sequence Match ( AT1G74500.1 )
(BLAST)

1: MSGRRSRSRQ SSGTSRISED QINDLIIKLQ QLLPELRDSR RSDKVSAARV LQDTCNYIRN LHREVDDLSE RLSELLANSD TAQAALIRSL LTQ

Arabidopsis Description

PRE3Transcription factor PRE3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA64]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.