Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G523300.1 | Wheat | mitochondrion | 96.88 | 96.88 |
| TraesCS2B01G550800.1 | Wheat | mitochondrion | 94.79 | 94.79 |
| HORVU2Hr1G115240.2 | Barley | mitochondrion | 92.71 | 91.75 |
| Os04t0641700-00 | Rice | mitochondrion | 87.5 | 80.77 |
| Zm00001d002121_P001 | Maize | mitochondrion, plastid | 87.5 | 80.77 |
| EES12951 | Sorghum | mitochondrion, plastid | 86.46 | 79.81 |
| TraesCS4B01G287900.1 | Wheat | nucleus | 62.5 | 65.22 |
| TraesCS4B01G288000.1 | Wheat | nucleus | 50.0 | 56.47 |
| TraesCS6B01G334600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 45.83 | 50.0 |
| TraesCS7B01G090500.1 | Wheat | nucleus | 45.83 | 50.0 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G550900.1 | EnsemblPlantsGene:TraesCS2B01G550900 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF117 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SUPFAM:SSF47459 |
| MapMan:15.5.32 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:747077230..747077629
Molecular Weight (calculated)
10352.2 Da
IEP (calculated)
8.544
GRAVY (calculated)
-0.272
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSSSRRSRT RHAGSSTSIS EDQISELLSK LQALLPESQA RNGAHRGSAA RVLQETCSYI RSLHREVDNL SETLAALLAS DAVTAEQAAV IRSLLM
1: MSNRRSRQTS NASRISDDQM IDLVSKLRQF LPEIHERRRS DKVSASKVLQ ETCNYIRKLH REVDNLSDRL SQLLDSVDED SPEAAVIRSL LM
Arabidopsis Description
PRE5Transcription factor PRE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.