Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH63380 | Soybean | nucleus | 89.01 | 88.04 |
| VIT_14s0108g00420.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 81.32 | 82.22 |
| VIT_01s0026g02030.t01 | Wine grape | mitochondrion | 82.42 | 81.52 |
| KRH54526 | Soybean | endoplasmic reticulum, vacuole | 84.62 | 52.74 |
| VIT_17s0000g05950.t01 | Wine grape | nucleus | 51.65 | 52.22 |
Protein Annotations
| EntrezGene:100248549 | wikigene:100248549 | MapMan:15.5.32 | Gene3D:4.10.280.10 | EMBL:AM439603 | ProteinID:CAN67278 |
| ProteinID:CAN67278.1 | ProteinID:CBI15249 | ProteinID:CBI15249.3 | ncoils:Coil | UniProt:D7SID8 | EMBL:FN594950 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | EntrezGene:LOC100248549 | wikigene:LOC100248549 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF172 | SUPFAM:SSF47459 | UniParc:UPI00015CC6FD | ArrayExpress:VIT_17s0000g05900 | EnsemblPlantsGene:VIT_17s0000g05900 | EnsemblPlants:VIT_17s0000g05900.t01 |
| unigene:Vvi.20336 | RefSeq:XP_002274840 | RefSeq:XP_002274840.1 | InterPro:bHLH_dom | SEG:seg | : |
Description
No Description!
Coordinates
chr17:-:6455525..6456812
Molecular Weight (calculated)
10199.0 Da
IEP (calculated)
9.363
GRAVY (calculated)
-0.611
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSRRSRSRQ SGGSRITDDQ INDLVSKLQQ LLPEIRGRHS DKVSAAKVLQ ETCNYIRSLN REVDDLSERL SELLATTDSA QAAIIRSLLT Q
1: MSGRRSRSRQ SSGTSRISED QINDLIIKLQ QLLPELRDSR RSDKVSAARV LQDTCNYIRN LHREVDDLSE RLSELLANSD TAQAALIRSL LTQ
Arabidopsis Description
PRE3Transcription factor PRE3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA64]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.