CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

plastid 1
mitochondrion 1
endoplasmic reticulum 3
extracellular 2
vacuole 3
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63380	Soybean	nucleus	60.27	95.65
VIT_17s0000g05900.t01	Wine grape	mitochondrion	52.74	84.62
KRH45881	Soybean	mitochondrion	48.63	76.34
KRG93518	Soybean	mitochondrion	47.26	75.82
KRH18488	Soybean	mitochondrion	47.26	75.82
KRH69304	Soybean	mitochondrion	47.95	75.27
KRH40108	Soybean	cytosol, mitochondrion, nucleus, plastid	47.26	75.0
KRH74825	Soybean	mitochondrion	47.26	74.19
KRH01162	Soybean	cytosol, mitochondrion, nucleus, plastid	46.58	73.91
KRG99125	Soybean	cytosol, mitochondrion, nucleus	45.89	72.04
KRH46796	Soybean	nucleus	30.82	49.45
KRH54533	Soybean	nucleus	25.34	40.66
KRH63371	Soybean	nucleus	24.66	39.13

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A0R0JJ69	EMBL:ACUP02003537	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G191800
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRH54526	ProteinID:KRH54526
ProteinID:KRH54526.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF172	SUPFAM:SSF47459
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0006EDC426	InterPro:bHLH_dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:16867309..16870116

Molecular Weight (calculated)

16735.9 Da

IEP (calculated)

8.491

GRAVY (calculated)

-0.428

Length

146 amino acids

Sequence
(BLAST)

001: MTEKVENKRT SLSFSLFLSL SLFLVHFLSL ETCTRCSESS NPIFGNTLGR YYSISLERRS RSRQTSSSRN ITDDQINDLV SKLQQLLPEI RDRRSDKVSA
101: SKVLQETCNY IRSLHREVGD LSERLSELLD TTDTAQAAII RNLLMQ

Best Arabidopsis Sequence Match ( AT3G47710.1 )
(BLAST)

1: MSSRKSRSRQ TGASMITDEQ INDLVLQLHR LLPELANNRR SGKVSASRVL QETCSYIRNL SKEVDDLSER LSQLLESTDS AQAALIRSLL MQ

Arabidopsis Description

PRE4Transcription factor PRE4 [Source:UniProtKB/Swiss-Prot;Acc:F4JCN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.