CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93518	Soybean	mitochondrion	100.0	100.0
KRH40108	Soybean	cytosol, mitochondrion, nucleus, plastid	90.11	89.13
VIT_14s0108g00420.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	87.91	88.89
KRH01162	Soybean	cytosol, mitochondrion, nucleus, plastid	89.01	88.04
Solyc02g087860.2.1	Tomato	nucleus	82.42	81.52
PGSC0003DMT400003587	Potato	nucleus	82.42	81.52
PGSC0003DMT400017748	Potato	nucleus	82.42	80.65
Solyc02g067380.2.1	Tomato	nucleus	82.42	79.79
KRH63380	Soybean	nucleus	80.22	79.35
CDY20013	Canola	cytosol, mitochondrion, nucleus, plastid	78.02	77.17
AT3G28857.1	Thale cress	mitochondrion	78.02	77.17
Bra033063.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	76.92	76.09
CDX86409	Canola	cytosol, mitochondrion, nucleus, plastid	76.92	76.09
CDY00110	Canola	cytosol, mitochondrion, nucleus, plastid	76.92	76.09
CDY70014	Canola	cytosol, mitochondrion, nucleus, plastid	76.92	76.09
Bra025358.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	76.92	76.09
CDX67440	Canola	mitochondrion	75.82	75.0
AT5G39860.1	Thale cress	mitochondrion	75.82	75.0
CDY65320	Canola	mitochondrion	75.82	75.0
CDY04040	Canola	cytosol, mitochondrion, nucleus, plastid	75.82	75.0
PGSC0003DMT400008752	Potato	plastid	78.02	73.96
Bra028443.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	74.73	73.91
KRH45881	Soybean	mitochondrion	74.73	73.12
CDY63469	Canola	nucleus	74.73	73.12
KRG99125	Soybean	cytosol, mitochondrion, nucleus	72.53	70.97
KRH69304	Soybean	mitochondrion	71.43	69.89
KRH74825	Soybean	mitochondrion	70.33	68.82
KRH54526	Soybean	endoplasmic reticulum, vacuole	75.82	47.26
KRH46796	Soybean	nucleus	39.56	39.56
KRH54533	Soybean	nucleus	31.87	31.87
KRH63371	Soybean	nucleus	31.87	31.52

Protein Annotations

EntrezGene:100794486	MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A0K2CT67	EMBL:ACUP02008077	EMBL:ACUP02011579
ncoils:Coil	EnsemblPlantsGene:GLYMA_13G063800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	ProteinID:KRG93518.1	ProteinID:KRH18487.1	EnsemblPlants:KRH18488
ProteinID:KRH18488	ProteinID:KRH18488.1	EMBL:KT031128	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF299	SUPFAM:SSF47459	UniParc:UPI0000E649EF	InterPro:bHLH_dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:+:16302368..16304936

Molecular Weight (calculated)

10366.3 Da

IEP (calculated)

8.521

GRAVY (calculated)

-0.547

Length

91 amino acids

Sequence
(BLAST)

1: MSSRRSRQQS ASTRISDDQI IDLVSKLRQL VPEIRDRRSD KVSASKVLQE TCNYIRSLHR EVDDLSERLS QLLATIDADS PEAAIIRSLI N

Best Arabidopsis Sequence Match ( AT3G28857.1 )
(BLAST)

1: MSNRRSRQTS NASRISDDQM IDLVSKLRQF LPEIHERRRS DKVSASKVLQ ETCNYIRKLH REVDNLSDRL SQLLDSVDED SPEAAVIRSL LM

Arabidopsis Description

PRE5Transcription factor PRE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.