CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025358.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	100.0	100.0
CDY63469	Canola	nucleus	95.65	94.62
CDY20013	Canola	cytosol, mitochondrion, nucleus, plastid	92.39	92.39
CDY00110	Canola	cytosol, mitochondrion, nucleus, plastid	91.3	91.3
AT3G28857.1	Thale cress	mitochondrion	90.22	90.22
CDY70014	Canola	cytosol, mitochondrion, nucleus, plastid	89.13	89.13
CDY04040	Canola	cytosol, mitochondrion, nucleus, plastid	88.04	88.04
CDX67440	Canola	mitochondrion	83.7	83.7
CDY65320	Canola	mitochondrion	83.7	83.7
VIT_14s0108g00420.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	76.09	77.78
KRG93518	Soybean	mitochondrion	76.09	76.92
KRH18488	Soybean	mitochondrion	76.09	76.92
KRH01162	Soybean	cytosol, mitochondrion, nucleus, plastid	73.91	73.91
Solyc02g087860.2.1	Tomato	nucleus	73.91	73.91
KRH40108	Soybean	cytosol, mitochondrion, nucleus, plastid	73.91	73.91
PGSC0003DMT400003587	Potato	nucleus	73.91	73.91
PGSC0003DMT400017748	Potato	nucleus	73.91	73.12
Solyc02g067380.2.1	Tomato	nucleus	73.91	72.34
CDY46428	Canola	nucleus	72.83	71.28
CDY40269	Canola	nucleus	70.65	69.15
CDX91006	Canola	mitochondrion	69.57	68.82
CDY28427	Canola	nucleus	69.57	68.09
CDX96550	Canola	cytosol, mitochondrion, nucleus, plastid	66.3	67.78
CDX85562	Canola	mitochondrion	68.48	67.74
PGSC0003DMT400008752	Potato	plastid	70.65	67.71
CDY16207	Canola	nucleus	69.57	67.37
CDX73095	Canola	cytosol, mitochondrion, nucleus, plastid	65.22	66.67
CDY68961	Canola	mitochondrion	67.39	66.67
CDX69545	Canola	mitochondrion, plastid	67.39	65.96
CDX78615	Canola	mitochondrion	66.3	64.89
CDX85055	Canola	mitochondrion, plastid	66.3	64.89
CDY69564	Canola	cytosol, nucleus	61.96	64.77
CDX85841	Canola	cytosol, mitochondrion, nucleus, plastid	64.13	63.44
CDX85840	Canola	cytosol, mitochondrion, nucleus, plastid	64.13	63.44
CDX68180	Canola	cytosol, mitochondrion, nucleus, plastid	64.13	63.44
CDY24160	Canola	nucleus	63.04	62.37
CDY36934	Canola	nucleus	61.96	61.29

Protein Annotations

EnsemblPlants:CDX86409	EnsemblPlantsGene:GSBRNA2T00144548001	Gene3D:4.10.280.10	GO:A0A078DDK1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF299	PFAM:PF00010	PFscan:PS50888	ProteinID:CDX86409	ProteinID:CDX86409.1
SEG:seg	SUPFAM:SSF47459	UniParc:UPI000253FB53	MapMan:15.5.32	:	:

Description

BnaA06g31260D

Coordinates

chrLK031845:+:1446728..1447278

Molecular Weight (calculated)

10716.8 Da

IEP (calculated)

9.332

GRAVY (calculated)

-0.674

Length

92 amino acids

Sequence
(BLAST)

1: MSNRRSRQSS SATRISDDQI IDLVSKLRQF LPEIRERRRS DKVSASKVLQ ETCNYIRKLH REVDNISDRL SLLLDSVDED SQEAAVIRNL LM

Best Arabidopsis Sequence Match ( AT3G28857.1 )
(BLAST)

1: MSNRRSRQTS NASRISDDQM IDLVSKLRQF LPEIHERRRS DKVSASKVLQ ETCNYIRKLH REVDNLSDRL SQLLDSVDED SPEAAVIRSL LM

Arabidopsis Description

PRE5Transcription factor PRE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.