Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018117.1-P | Field mustard | nucleus | 97.85 | 97.85 |
| CDY36934 | Canola | nucleus | 97.85 | 97.85 |
| AT3G47710.1 | Thale cress | nucleus | 88.17 | 89.13 |
| CDX96550 | Canola | cytosol, mitochondrion, nucleus, plastid | 74.19 | 76.67 |
| CDX73095 | Canola | cytosol, mitochondrion, nucleus, plastid | 74.19 | 76.67 |
| Solyc06g070910.2.1 | Tomato | nucleus | 73.12 | 73.91 |
| CDY46428 | Canola | nucleus | 73.12 | 72.34 |
| CDX85840 | Canola | cytosol, mitochondrion, nucleus, plastid | 72.04 | 72.04 |
| CDX85841 | Canola | cytosol, mitochondrion, nucleus, plastid | 72.04 | 72.04 |
| CDX68180 | Canola | cytosol, mitochondrion, nucleus, plastid | 72.04 | 72.04 |
| CDY40269 | Canola | nucleus | 72.04 | 71.28 |
| CDX67440 | Canola | mitochondrion | 69.89 | 70.65 |
| CDY65320 | Canola | mitochondrion | 69.89 | 70.65 |
| CDY28427 | Canola | nucleus | 70.97 | 70.21 |
| CDY16207 | Canola | nucleus | 70.97 | 69.47 |
| CDY69564 | Canola | cytosol, nucleus | 65.59 | 69.32 |
| CDY20013 | Canola | cytosol, mitochondrion, nucleus, plastid | 65.59 | 66.3 |
| CDY00110 | Canola | cytosol, mitochondrion, nucleus, plastid | 64.52 | 65.22 |
| CDX69545 | Canola | mitochondrion, plastid | 65.59 | 64.89 |
| CDX91006 | Canola | mitochondrion | 64.52 | 64.52 |
| CDX85562 | Canola | mitochondrion | 64.52 | 64.52 |
| CDY70014 | Canola | cytosol, mitochondrion, nucleus, plastid | 63.44 | 64.13 |
| CDX85055 | Canola | mitochondrion, plastid | 64.52 | 63.83 |
| CDY68961 | Canola | mitochondrion | 63.44 | 63.44 |
| CDY04040 | Canola | cytosol, mitochondrion, nucleus, plastid | 62.37 | 63.04 |
| CDX86409 | Canola | cytosol, mitochondrion, nucleus, plastid | 62.37 | 63.04 |
| CDX78615 | Canola | mitochondrion | 63.44 | 62.77 |
| CDY63469 | Canola | nucleus | 61.29 | 61.29 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078GCE6 | UniProt:A0A078GCE6 | EnsemblPlants:CDY24160 | ProteinID:CDY24160 |
| ProteinID:CDY24160.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00024766001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF172 | SUPFAM:SSF47459 | UniParc:UPI0004EB4BF3 | InterPro:bHLH_dom | SEG:seg |
Description
BnaC03g57170DBnaC03g57170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCE6]
Coordinates
chrLK032154:-:396557..397331
Molecular Weight (calculated)
10469.5 Da
IEP (calculated)
9.365
GRAVY (calculated)
-0.538
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSRRSRSSR QTGASMISED QINDLVLQLH RLLPELGNNH RRSGKVSASK VLQETCTYIR NLNKEVDDLS ERLSQLLEST DSAQAALIRS LLM
1: MSSRKSRSRQ TGASMITDEQ INDLVLQLHR LLPELANNRR SGKVSASRVL QETCSYIRNL SKEVDDLSER LSQLLESTDS AQAALIRSLL MQ
Arabidopsis Description
PRE4Transcription factor PRE4 [Source:UniProtKB/Swiss-Prot;Acc:F4JCN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.