Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68180 | Canola | cytosol, mitochondrion, nucleus, plastid | 100.0 | 100.0 |
| CDX85841 | Canola | cytosol, mitochondrion, nucleus, plastid | 100.0 | 100.0 |
| Bra003797.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 98.92 | 98.92 |
| AT1G74500.1 | Thale cress | nucleus | 94.62 | 94.62 |
| CDX96550 | Canola | cytosol, mitochondrion, nucleus, plastid | 91.4 | 94.44 |
| CDX73095 | Canola | cytosol, mitochondrion, nucleus, plastid | 90.32 | 93.33 |
| CDY69564 | Canola | cytosol, nucleus | 86.02 | 90.91 |
| Solyc06g070910.2.1 | Tomato | nucleus | 76.34 | 77.17 |
| CDY46428 | Canola | nucleus | 76.34 | 75.53 |
| CDY16207 | Canola | nucleus | 76.34 | 74.74 |
| CDY40269 | Canola | nucleus | 75.27 | 74.47 |
| CDY28427 | Canola | nucleus | 74.19 | 73.4 |
| CDY36934 | Canola | nucleus | 73.12 | 73.12 |
| CDY24160 | Canola | nucleus | 72.04 | 72.04 |
| CDX67440 | Canola | mitochondrion | 65.59 | 66.3 |
| CDY65320 | Canola | mitochondrion | 65.59 | 66.3 |
| CDY20013 | Canola | cytosol, mitochondrion, nucleus, plastid | 64.52 | 65.22 |
| CDY70014 | Canola | cytosol, mitochondrion, nucleus, plastid | 64.52 | 65.22 |
| CDX91006 | Canola | mitochondrion | 64.52 | 64.52 |
| CDY68961 | Canola | mitochondrion | 64.52 | 64.52 |
| CDX85562 | Canola | mitochondrion | 64.52 | 64.52 |
| CDY04040 | Canola | cytosol, mitochondrion, nucleus, plastid | 63.44 | 64.13 |
| CDY00110 | Canola | cytosol, mitochondrion, nucleus, plastid | 63.44 | 64.13 |
| CDX86409 | Canola | cytosol, mitochondrion, nucleus, plastid | 63.44 | 64.13 |
| CDX69545 | Canola | mitochondrion, plastid | 63.44 | 62.77 |
| CDY63469 | Canola | nucleus | 62.37 | 62.37 |
| CDX85055 | Canola | mitochondrion, plastid | 62.37 | 61.7 |
| CDX78615 | Canola | mitochondrion | 61.29 | 60.64 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078D9A3 | EnsemblPlants:CDX85840 | ProteinID:CDX85840 | ProteinID:CDX85840.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00143623001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF172 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EC8143 | InterPro:bHLH_dom | SEG:seg |
Description
BnaC06g22940D
Coordinates
chrLK031843:-:191458..191825
Molecular Weight (calculated)
10620.7 Da
IEP (calculated)
9.397
GRAVY (calculated)
-0.546
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MSGRRSRSRQ VSGTSRISEE QINDLIIKLQ QLLPELRDSR RSDKVSAARV LQETCNYIRN LHREVDDLSE RLSELLANTD TAQAALIRSL LTL
1: MSGRRSRSRQ SSGTSRISED QINDLIIKLQ QLLPELRDSR RSDKVSAARV LQDTCNYIRN LHREVDDLSE RLSELLANSD TAQAALIRSL LTQ
Arabidopsis Description
PRE3Transcription factor PRE3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA64]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.