Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX67440 | |
| CDX68172 | |
| CDX68180 | |
| CDX69067 | |
| CDX73095 | |
| CDX73105 | |
| CDX75440 | |
| CDX76288 | |
| CDX77488 | nucleus |
| CDX81575 | nucleus |
| CDX85122 | nucleus |
| CDX85840 | |
| CDX85841 | |
| CDX85849 | |
| CDX86409 | nucleus |
| CDX87096 | |
| CDX88163 | |
| CDX96550 | |
| CDX96558 | |
| CDY00110 | nucleus |
| CDY00995 | |
| CDY04040 | nucleus |
| CDY05373 | |
| CDY05479 | |
| CDY05960 | |
| CDY17466 | |
| CDY18099 | nucleus |
| CDY19812 | |
| CDY20013 | nucleus |
| CDY20659 | nucleus |
| CDY22605 | nucleus |
| CDY24160 | |
| CDY25986 | nucleus |
| CDY31048 | nucleus |
| CDY33821 | nucleus |
| CDY35518 | |
| CDY36316 | |
| CDY36934 | |
| CDY45835 | nucleus |
| CDY53834 | nucleus |
| CDY56230 | nucleus |
| CDY61581 | nucleus |
| CDY63469 | nucleus |
| CDY65320 | |
| CDY65537 | |
| CDY69564 | |
| CDY70014 | nucleus |
| CDY72360 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55504 | Canola | nucleus | 95.51 | 94.9 |
| CDY30379 | Canola | cytosol | 32.69 | 82.26 |
| AT2G43060.1 | Thale cress | nucleus | 81.41 | 81.41 |
| CDY56346 | Canola | nucleus | 69.23 | 81.2 |
| PGSC0003DMT400014179 | Potato | mitochondrion | 30.13 | 36.72 |
| GSMUA_Achr11P... | Banana | nucleus | 35.9 | 35.44 |
| Solyc12g042010.1.1 | Tomato | mitochondrion | 28.21 | 34.65 |
| Os04t0660100-01 | Rice | cytosol | 38.46 | 29.7 |
| KXG27318 | Sorghum | plastid | 37.82 | 28.5 |
| Zm00001d001982_P001 | Maize | nucleus | 37.18 | 27.88 |
| TraesCS2B01G527100.1 | Wheat | nucleus, plastid | 35.9 | 27.86 |
| TraesCS2D01G499200.1 | Wheat | nucleus, plastid | 35.26 | 27.5 |
| Zm00001d026510_P001 | Maize | nucleus | 36.54 | 27.4 |
| TraesCS2A01G499000.1 | Wheat | plastid | 35.26 | 27.36 |
| HORVU2Hr1G111110.2 | Barley | mitochondrion | 33.97 | 25.85 |
Protein Annotations
| EnsemblPlants:CDY53659 | EnsemblPlantsGene:GSBRNA2T00011143001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| PANTHER:PTHR33124 | PANTHER:PTHR33124:SF31 | ProteinID:CDY53659 | ProteinID:CDY53659.1 | SEG:seg | UniParc:UPI0004EEDC4C |
| UniProt:A0A078IW93 | MapMan:15.5.32 | : | : | : | : |
Description
BnaC04g52930DBnaC04g52930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IW93]
Coordinates
chrLK033224:+:58227..58932
Molecular Weight (calculated)
17753.7 Da
IEP (calculated)
11.149
GRAVY (calculated)
-0.724
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MASADKPINT DVPEKDVFAL HFLQSLSNLR RQNTFDSPEK TNDRVKKIKK AAYVSMARAA GGTNRLWSRA LLRRAAKENN KVVRFPRRKK RVTCLRRRSN
101: RRDPVEEEEA ERLRNLVPGG GGMGTSKLME ETAHYIKCLS MQVKVMQCLV DGLAPK
101: RRDPVEEEEA ERLRNLVPGG GGMGTSKLME ETAHYIKCLS MQVKVMQCLV DGLAPK
001: MASADKLINT DVPEKDVFAF HFLQSLSNLR KQNPFDTPDQ KNYRVRKIKK AAYVSMARAA GGSSRLWSRA LLRRADKDDN KIVRFSRRKW KISSKRRRSN
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK
Arabidopsis Description
IBH1Transcription factor IBH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.