CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74635
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11100.1	CDX74635	AT5G35750.1	18642946
AT3G11100.1	CDY47297	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034866.1-P	Field mustard	nucleus	92.97	91.19
CDY36316	Canola	nucleus	82.42	83.73
AT3G11100.1	Thale cress	nucleus	76.56	78.71
CDX70144	Canola	cytosol	59.38	60.8
CDX98849	Canola	cytosol	64.84	54.07
VIT_08s0058g00200.t01	Wine grape	nucleus	53.52	53.94
Solyc06g051120.2.1	Tomato	nucleus	46.09	46.09
GSMUA_Achr9P04510_001	Banana	nucleus	44.92	43.23
PGSC0003DMT400077199	Potato	cytosol	45.31	42.49
CDX71939	Canola	nucleus, plastid	38.28	32.56
CDX98311	Canola	nucleus	37.89	31.09
CDY33246	Canola	nucleus	37.11	31.05
CDX67755	Canola	nucleus	38.28	31.01
CDY39101	Canola	nucleus, plastid	34.77	29.18
CDY61477	Canola	nucleus, plastid	33.98	28.9
CDY02487	Canola	nucleus, plastid	34.38	28.57
CDY39099	Canola	nucleus	35.16	28.39
CDY51405	Canola	nucleus	13.67	27.56
CDY08216	Canola	nucleus	35.16	27.44
CDX75751	Canola	nucleus	37.89	26.08
CDY26148	Canola	nucleus, plastid	34.38	24.65
CDX93016	Canola	nucleus	17.97	23.23
CDY33093	Canola	cytosol, plastid	34.38	20.14
CDX94808	Canola	nucleus	23.83	19.0

Protein Annotations

EnsemblPlants:CDY00995	EnsemblPlantsGene:GSBRNA2T00111014001	Gene3D:1.10.10.60	InterPro:IPR006578	InterPro:MADF-dom	ncoils:Coil
PANTHER:PTHR31307	PANTHER:PTHR31307:SF35	PFAM:PF13837	ProteinID:CDY00995	ProteinID:CDY00995.1	SEG:seg
SMART:SM00595	UniParc:UPI0004EBABBD	MapMan:15.5.20	:	:	:

Description

BnaC05g42050D

Coordinates

chrLK031923:-:523998..525251

Molecular Weight (calculated)

28790.8 Da

IEP (calculated)

5.830

GRAVY (calculated)

-0.980

Length

256 amino acids

Sequence
(BLAST)

001: MDTTPETQSK SQSQSGGGGG SHRLPPGRED WWSEDATATL IEAWGDRYVH LSRGNLRQND WKEVADAVNS RHGNGRPKTD VQCKNRIDTL KKKYKTEKAK
101: PSSSWCFFER LDFLIGPVAL KKSTGGAGAL KSPLTKPISS ESSLDDDDDD DDDDDVEGDW GFVARKHRRV EDEDLCPDPR EGSSCRELAR AILKLGEVYE
201: RIESAKQGMM IELEKQRMEA AKEIELQRMN MLMDMQMELE KSKLGKRRAA ASGKKL

Best Arabidopsis Sequence Match ( AT3G11100.1 )
(BLAST)

001: METTPETQSK THRLPAGRED WWSEDATATL IEAWGDRYVN LNRGNLRQND WKEVADAVNS SHGNGRPKTD VQCKNRIDTL KKKYKTEKAK PLSNWCFFDR
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL

Arabidopsis Description

AT3g11100/F11B9_105 [Source:UniProtKB/TrEMBL;Acc:Q8VZI9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.