CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69854
CDX73400
CDX73989
CDX76117
CDX77081
CDX96983
CDY02916
CDY07934
CDY08733
CDY22192
CDY27973
CDY28668
CDY28862
CDY32850
CDY36008
CDY36508
CDY37505
CDY40204
CDY41301
CDY41596
CDY44721

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14180.1	CDX77081	AT3G01690.1	21798944
AT3G14180.1	CDY28668	AT3G01690.1	21798944
AT3G14180.1	CDY28862	AT3G01690.1	21798944
AT3G14180.1	CDY32850	AT3G01690.1	21798944
AT3G14180.1	CDY37505	AT3G01690.1	21798944
AT3G14180.1	CDY27973	AT3G08780.1	21798944
AT3G14180.1	CDY36008	AT3G08780.1	21798944
AT3G14180.1	CDX73989	AT3G09630.1	21798944
AT3G14180.1	CDY07934	AT3G09630.1	21798944
AT3G14180.1	CDY22192	AT3G09630.1	21798944
AT3G14180.1	CDY41301	AT3G09630.1	21798944
AT3G14180.1	CDY41596	AT3G09630.1	21798944
AT3G14180.1	CDY44721	AT3G09630.1	21798944
AT3G14180.1	CDX73400	AT3G55150.1	21798944
AT3G14180.1	CDX76117	AT3G55150.1	21798944
AT3G14180.1	CDY02916	AT3G55150.1	21798944
AT3G14180.1	CDY40204	AT3G55150.1	21798944
AT3G14180.1	CDX69854	AT5G10210.1	21798944
AT3G14180.1	CDX96983	AT5G10210.1	21798944
AT3G14180.1	CDY08733	AT5G67620.1	21798944
AT3G14180.1	CDY36508	AT5G67620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G14180.1	Thale cress	nucleus	81.45	68.4
CDY33246	Canola	nucleus	54.84	66.67
CDY39099	Canola	nucleus	56.72	66.56
CDY39101	Canola	nucleus, plastid	52.15	63.61
KRH06239	Soybean	nucleus	52.15	52.43
KRH47662	Soybean	nucleus, plastid	51.34	51.9
Solyc03g122030.1.1	Tomato	nucleus	50.0	51.24
PGSC0003DMT400088401	Potato	nucleus, plastid	51.08	50.94
CDY61477	Canola	nucleus, plastid	41.13	50.83
VIT_09s0002g00720.t01	Wine grape	nucleus	49.46	50.55
CDY02487	Canola	nucleus, plastid	40.32	48.7
CDY08216	Canola	nucleus	41.67	47.26
CDY51405	Canola	nucleus	15.59	45.67
CDY26148	Canola	nucleus, plastid	41.67	43.42
CDY36316	Canola	nucleus	27.42	40.48
CDY00995	Canola	nucleus	26.08	37.89
CDX70144	Canola	cytosol	24.19	36.0
GSMUA_Achr8P23650_001	Banana	nucleus	32.8	35.78
GSMUA_Achr9P14340_001	Banana	nucleus	34.68	35.64
CDY33093	Canola	cytosol, plastid	39.25	33.41
Zm00001d025514_P001	Maize	nucleus	34.14	32.4
EES12241	Sorghum	nucleus	35.22	32.11
CDX71939	Canola	nucleus, plastid	25.54	31.56
TraesCS2A01G313300.1	Wheat	nucleus, plastid	35.22	31.49
TraesCS2B01G332100.1	Wheat	nucleus, plastid	34.95	31.25
CDX98849	Canola	cytosol	25.54	30.94
Os04t0445600-00	Rice	nucleus	34.68	30.94
TraesCS6A01G198600.1	Wheat	nucleus, plastid	30.65	30.81
CDX98311	Canola	nucleus	25.81	30.77
TraesCS2D01G311800.1	Wheat	nucleus, plastid	34.14	30.75
Zm00001d003549_P001	Maize	nucleus	31.72	30.65
GSMUA_Achr3P05880_001	Banana	nucleus	33.06	30.45
CDX67755	Canola	nucleus	25.81	30.38
Os02t0565000-01	Rice	nucleus	33.06	29.36
TraesCS6B01G230000.1	Wheat	nucleus	32.53	29.09
HORVU6Hr1G050140.1	Barley	nucleus, plastid	32.53	28.95
Zm00001d016876_P001	Maize	nucleus, plastid	31.18	28.86
TraesCS6D01G184500.2	Wheat	nucleus	31.99	28.61
KXG30464	Sorghum	nucleus, plastid	30.38	26.78
Zm00001d010753_P001	Maize	nucleus	22.31	25.3
CDX93016	Canola	nucleus	12.37	23.23
CDX94808	Canola	nucleus	17.47	20.25
HORVU2Hr1G077940.1	Barley	cytosol, nucleus, plastid	12.1	20.09
Zm00001d042917_P001	Maize	golgi, plasma membrane	24.46	13.7

Protein Annotations

EnsemblPlants:CDX75751	EnsemblPlantsGene:GSBRNA2T00123678001	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF4	PFAM:PF13837
ProteinID:CDX75751	ProteinID:CDX75751.1	SEG:seg	UniParc:UPI0004EDAF2A	MapMan:15.5.20	:

Description

BnaC03g38340D

Coordinates

chrLK031805:-:337686..339079

Molecular Weight (calculated)

41021.3 Da

IEP (calculated)

9.462

GRAVY (calculated)

-0.941

Length

372 amino acids

Sequence
(BLAST)

001: MEDEEEIQSR ASSSPDPSPS PPPGGVTVTV ASTGPPSYSL TPPSSSSQQQ RDPNALALAL LPSGGGGGGG GGSSSNGRAS GGGGGREDCW SEKATAVLID
101: AWGERYMELS RGNLKQKHWR EVAEIVSGME DYGKTAKTDI QCKNRIDTVK KKYKQEKVRI SSGGGRSRWV FFDKLDRLIG STAKIPAIGS PGGGLNKIPM
201: GIPMDSRSNV YHQQQVRTLP QQQQGMMMVK RCSESKRWRF SKRNATDSDS EESDAAPMSD DDSGDSLPPP PLSKRMKQEG GNKWRELSRA IMRFGEAYEQ
301: TENAKLQQVV EMEKERMKFL KEMELQRMQF FVKTQLEISE IKEQGRRMGN TSNDHHKSKN NMNEIVNKDV GN

Best Arabidopsis Sequence Match ( AT3G14180.1 )
(BLAST)

001: MEDDEDIRSQ GSDSPDPSSS PPAGRITVTV ASAGPPSYSL TPPGNSSQKD PDALALALLP IQASGGGNNS SGRPTGGGGR EDCWSEAATA VLIDAWGERY
101: LELSRGNLKQ KHWKEVAEIV SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIANGGGR SRWVFFDKLD RLIGSTAKIP TATSGVSGPV GGLHKIPMGI
201: PMGSRSNLYH QQAKAATPPF NNLDRLIGAT ARVSAASFGG SGGGGGGGSV NVPMGIPMSS RSAPFGQQGR TLPQQGRTLP QQQQQGMMVK RCSESKRWRF
301: RKRNASDSDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKK QDGDGVGNKW RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKELE LQRMQFFVKT
401: QLEISQLKQQ HGRRMGNTSN DHHHSRKNNI NAIVNNNNDL GNN

Arabidopsis Description

ASIL2ASIL2 [Source:UniProtKB/TrEMBL;Acc:A0A178V8Z7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.