CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88046
EER90739
EER92459
EER92590
EER93786
EER96837
EES01406
EES01418
EES03335
EES03615
EES04270
EES07590
EES07748
EES07862
EES10818
EES15479
EES19859
KXG22792
KXG23778
KXG23779
KXG25366
KXG33681
KXG34535
KXG39943
OQU79022
OQU85418
OQU91338
OQU92832

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54060.1	EER93786	AT1G49410.1	21798944
AT1G54060.1	EER88046	AT1G57620.1	21798944
AT1G54060.1	EER96837	AT1G57620.1	21798944
AT1G54060.1	EES07590	AT1G57620.1	21798944
AT1G54060.1	KXG25366	AT1G57620.1	21798944
AT1G54060.1	EES01418	AT2G31490.1	21798944
AT1G54060.1	EES03615	AT2G31490.1	21798944
AT1G54060.1	OQU91338	AT2G31490.1	21798944
AT1G54060.1	EER92590	AT2G32840.1	21798944
AT1G54060.1	KXG23778	AT2G39705.1	21798944
AT1G54060.1	KXG23779	AT2G39705.1	21798944
AT1G54060.1	KXG33681	AT2G39705.1	21798944
AT1G54060.1	OQU92832	AT2G39705.1	21798944
AT1G54060.1	EER90739	AT3G09630.1	21798944
AT1G54060.1	KXG34535	AT3G09630.1	21798944
AT1G54060.1	EES15479	AT3G24860.1	21798944
AT1G54060.1	EES01406	AT3G29160.1	21798944
AT1G54060.1	EES19859	AT3G29160.1	21798944
AT1G54060.1	OQU85418	AT4G17270.1	21798944
AT1G54060.1	EER92459	AT4G32260.1	21798944
AT1G54060.1	EER90739	AT5G02870.1	21798944
AT1G54060.1	KXG34535	AT5G02870.1	21798944
AT1G54060.1	EES04270	AT5G41520.1	21798944
AT1G54060.1	EES10818	AT5G41520.1	21798944
AT1G54060.1	EES03335	AT5G60160.1	21798944
AT1G54060.1	EES07748	AT5G62030.1	21798944
AT3G14180.1	OQU79022	AT3G01690.1	21798944
AT3G14180.1	EES07862	AT3G08780.1	21798944
AT3G14180.1	KXG22792	AT3G08780.1	21798944
AT3G14180.1	EER90739	AT3G09630.1	21798944
AT3G14180.1	KXG34535	AT3G09630.1	21798944
AT3G14180.1	KXG39943	AT5G67620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025514_P001	Maize	nucleus	87.99	91.58
Zm00001d003549_P001	Maize	nucleus	81.62	86.49
TraesCS2B01G332100.1	Wheat	nucleus, plastid	71.32	69.95
TraesCS2D01G311800.1	Wheat	nucleus, plastid	70.59	69.73
Os04t0445600-00	Rice	nucleus	71.08	69.54
TraesCS2A01G313300.1	Wheat	nucleus, plastid	70.83	69.47
HORVU2Hr1G077940.1	Barley	cytosol, nucleus, plastid	36.27	66.07
KXG30464	Sorghum	nucleus, plastid	52.21	50.47
GSMUA_Achr8P23650_001	Banana	nucleus	33.09	39.59
KRH06239	Soybean	nucleus	35.29	38.92
KRH47662	Soybean	nucleus, plastid	35.05	38.86
CDY33246	Canola	nucleus	28.19	37.58
GSMUA_Achr9P14340_001	Banana	nucleus	33.33	37.57
CDY39101	Canola	nucleus, plastid	27.94	37.38
Bra021536.1-P	Field mustard	nucleus	27.7	36.93
CDY39099	Canola	nucleus	28.68	36.91
VIT_09s0002g00720.t01	Wine grape	nucleus	32.6	36.54
Bra021534.1-P	Field mustard	nucleus, plastid	27.45	36.13
Solyc03g122030.1.1	Tomato	nucleus	31.37	35.26
CDX75751	Canola	nucleus	32.11	35.22
GSMUA_Achr3P05880_001	Banana	nucleus	34.31	34.65
PGSC0003DMT400088401	Potato	nucleus, plastid	31.37	34.32
CDY61477	Canola	nucleus, plastid	25.25	34.22
Bra037960.1-P	Field mustard	nucleus, plastid	24.75	33.55
CDY02487	Canola	nucleus, plastid	25.25	33.44
EES03423	Sorghum	cytosol	25.74	33.12
CDY08216	Canola	nucleus	25.25	31.4
Bra014370.1-P	Field mustard	nucleus	25.74	31.34
AT3G14180.1	Thale cress	nucleus	33.33	30.7
EES18672	Sorghum	nucleus	25.74	30.26
CDY51405	Canola	nucleus	8.82	28.35
CDY26148	Canola	nucleus, plastid	24.75	28.29
AT1G54060.1	Thale cress	nucleus	26.47	28.2
Bra030909.1-P	Field mustard	nucleus	8.58	27.34
CDY33093	Canola	cytosol, plastid	25.49	23.8
OQU87430	Sorghum	nucleus, plastid	18.63	21.65

Protein Annotations

EnsemblPlants:EES12241	EnsemblPlantsGene:SORBI_3006G094500	EntrezGene:8075868	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF12
PFAM:PF13837	ProteinID:EES12241	ProteinID:EES12241.1	RefSeq:XP_002447913.1	SEG:seg	UniParc:UPI0001A8723E
UniProt:C5Y986	MapMan:15.5.20	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:46482555..46484433

Molecular Weight (calculated)

43141.3 Da

IEP (calculated)

6.714

GRAVY (calculated)

-0.834

Length

408 amino acids

Sequence
(BLAST)

001: MDDDDDVSHS LSPSPPSSSA LPVDGPVTVA AAPPGSAMAV ALPIHRTAAS LYASATGGGG GGGSGGGGGG GGREDAWSDG ATSALIDAWG ERFVALGRGS
101: LRHPQWQEVA DAVSSRDGYS KAPKSDVQCK NRIDTLKKKY KVERAKPVSG WQFFDRLDFL LAPTYGNKPG SGGNGGGGGH NSNSRSQMPG ALRVGFPQRS
201: RTPLMPAAGS AAKRRAPSPE PSVSSESSDG FPPVPALPAV NGKRKRTDEG RADDGGSSGD DRAQGLRELA QAIRRFGEAY ERVEAAKLEQ AAEMERRRMD
301: FTQELESQRV QFFLNTQMEL TQAKNHASPA TAAVPAGGSS RRMSVVTDAG GSSNHHSRYR ISHGDRHRHA PRPHYQQYHD NNNHAVAAAA SEGEQSDDEE
401: DDYEEESQ

Best Arabidopsis Sequence Match ( AT3G58630.2 )
(BLAST)

001: MDTVNDSFSP GSSRPSPATL SREDCWSEEA TFTLIQAWGN RYVDLSRGNL RQKHWQEVAN AVNDRHYNTG RNVSAAKSQP YRTDVQCKNR IDTLKKKYKV
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAGE T

Arabidopsis Description

Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8GXR6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.