CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018469_P001	Maize	cytosol, plastid	88.91	89.83
Os02t0815600-01	Rice	cytosol, endoplasmic reticulum, peroxisome	81.72	83.97
TraesCS6A01G386700.1	Wheat	cytosol	81.52	83.93
TraesCS6D01G371300.1	Wheat	cytosol	81.31	83.72
TraesCS6B01G425800.1	Wheat	cytosol	81.11	82.98
HORVU6Hr1G090270.1	Barley	cytosol, peroxisome, plastid	80.49	80.0
GSMUA_Achr5P17750_001	Banana	mitochondrion, plasma membrane	53.18	55.46
Bra010051.1-P	Field mustard	cytosol	48.46	52.44
CDY00247	Canola	cytosol	48.46	52.44
CDX86937	Canola	cytosol	48.25	52.11
AT5G62030.1	Thale cress	cytosol	47.84	51.43
KRH24351	Soybean	cytosol	48.67	51.3
VIT_00s0270g00100.t01	Wine grape	plastid	47.84	50.54
KRH39817	Soybean	cytosol	48.25	50.32
Solyc06g066300.1.1	Tomato	cytosol	47.64	48.03
PGSC0003DMT400043231	Potato	cytosol	47.23	47.82
EER90542	Sorghum	cytosol	16.22	15.37

Protein Annotations

MapMan:17.5.2.2.1	Gene3D:3.40.50.11840	Gene3D:3.40.50.11850	Gene3D:3.40.50.11860	EntrezGene:8056439	UniProt:C5XVV0
InterPro:DPH1/DPH2	InterPro:DPH1/DPH2_euk_archaea	EnsemblPlants:EES07748	ProteinID:EES07748	ProteinID:EES07748.1	GO:GO:0006412
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0017183
GO:GO:0019538	PFAM:PF01866	PIRSF:PIRSF004967	PANTHER:PTHR10762	PANTHER:PTHR10762:SF1	EnsemblPlantsGene:SORBI_3004G343400
unigene:Sbi.15568	TIGRFAMs:TIGR00322	UniParc:UPI0001A860B3	RefSeq:XP_002454772.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:67369066..67371769

Molecular Weight (calculated)

52189.7 Da

IEP (calculated)

6.822

GRAVY (calculated)

-0.022

Length

487 amino acids

Sequence
(BLAST)

001: MDAGDASTSL ALTAAEPSPP SPTRRSTRPG NPPKRFVHTP IPPSILSDPT LAAAAISLLP ANYNFELPKT AHRIRSAGAR RVALQLPEGL LLFALPLSHL
101: LAPYLEPDPA NDVLVLADAT YGACCLADRP ATALAADVLV HYGHSCLVPV TSSLLPVLYV FVEIRVDATR LAAAVRNAFP DPAAAPRLAI AGTVQFIAAV
201: HAAREMLTKE GYRDIVVPQA KPLSAGEILG CTAPTLKKSE EVGAVVFVAD GRFHLEAFMI ANPGVKAYRF DPFLGVLVLE EYDHVGMKQA RKAAVLAARK
301: AKNWGVILGT LGRQGSTKVL DRVVEHLEEK ELEHTVVLMS ELSPARMELF GDSIDAWVQI ACPRLSIDWG EGFKKPVLTT FEFDVALGYV PGWWEKGSRE
401: CGGECGSGCC SGSGTCGNCN CSGGDFGGDY PMDYYSQDGG DWNSCYMKKK PSTGERKLRV RIASNGVQAE KRGNQDSCGV EINTLVR

Best Arabidopsis Sequence Match ( AT5G62030.1 )
(BLAST)

001: MELSDPNNGK TNKPKQPPKR FIKNQIPDSI LGDASLNAAI SILPSIYHFE VHKCVWRIKT SNAKRIALQL PEGLLMYALT LSDIFTSFAG ASHCFVLGDV
101: TYGACCVDDF SACALGADLL IHYGHSCLVP IDSTKIPCLY VFVEIQIDVK CLLNTIHLNL ASDVKNIILA GTIQFTSAIR AVKPELEKQG FNVLIPQSKP
201: LSAGEVLGCT APKVKTVEDC KDQVLVFVAD GRFHLEAFMI ANPKIKAFRY DPYLGKLFLE EYDHKGMRET RMRAIARARE AKTWGIVLGT LGRQGNPKIL
301: ERLEKKMMEK GIDSTVVLMS ELSPTRVALF EDSVDAWVQI ACPRLSIDWG EAFLKPLLTT FEAEIALGFI RGWWENDSSS RVNSSSGCCK EDKETSCACK
401: NENVKDDKKD NDGALDGDYP MDYYAQEGGE WNSSYLKKSS RPIRRNPLPS SVV

Arabidopsis Description

Diphthamide synthesis DPH2 family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.