CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
peroxisome 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034797_P002	Maize	cytosol	89.69	86.01
Os11t0265600-00	Rice	cytosol	75.88	77.08
TraesCS4B01G083800.1	Wheat	cytosol, mitochondrion	71.98	72.98
HORVU4Hr1G013960.2	Barley	plastid	72.76	67.03
GSMUA_Achr1P13430_001	Banana	cytosol	58.95	59.65
VIT_05s0094g00370.t01	Wine grape	cytosol	53.5	54.35
Bra007464.1-P	Field mustard	cytosol	50.39	53.18
CDX71889	Canola	nucleus	50.19	52.55
KRH23572	Soybean	cytosol	41.25	50.96
AT3G59630.2	Thale cress	cytoskeleton, cytosol, nucleus	48.64	50.92
PGSC0003DMT400072523	Potato	cytosol	47.86	49.4
Solyc10g081540.1.1	Tomato	cytosol	47.47	49.0
KRH09732	Soybean	cytosol, mitochondrion, nucleus	50.97	45.96
CDY69029	Canola	cytosol	19.46	45.45
CDY70834	Canola	cytosol	18.68	44.24
EES07748	Sorghum	plastid	15.37	16.22

Protein Annotations

MapMan:17.5.2.2.2	Gene3D:3.40.50.11840	Gene3D:3.40.50.11860	EntrezGene:8079641	UniProt:C5WT13	InterPro:DHP2_euk
InterPro:DPH1/DPH2	EnsemblPlants:EER90542	ProteinID:EER90542	ProteinID:EER90542.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0006412	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0017183	GO:GO:0019538	PFAM:PF01866	PANTHER:PTHR10762	PANTHER:PTHR10762:SF2
EnsemblPlantsGene:SORBI_3001G017700	TIGRFAMs:TIGR00272	TIGRFAMs:TIGR00322	UniParc:UPI0001A82552	RefSeq:XP_002463544.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:1503221..1511448

Molecular Weight (calculated)

56802.2 Da

IEP (calculated)

4.776

GRAVY (calculated)

-0.173

Length

514 amino acids

Sequence
(BLAST)

001: MEADIASRYE IPRTAQFLRD CAYNRVALQF PDEMLKDAAA VARALRRELA SGGAGGGVRV FVMADTAYNS CCVDEVGASH IDAQCVVHYG HACMSPTSNL
101: PAYFVFGKAQ LDIHACASTL LECSRTSNKR ILVLYGLEYA YALDDLRQAF MESCKSNSCN PEVQYAEVLC SVMSPSSSTT EENTIPQSSG TSCNRDITRN
201: SDVATFLDNH YGMKCSSSTQ KYSLGGITWD ISVDEKMEDY LIFWIGQDNS AFANIVLTFN KCEIVRYDAI ENQLTADISH LMKILRRRYY LVEKAKDANI
301: IGILVGTLGA AGYLHIIEQM KELIKAAGKK SYTLVMGRPN SAKLANFPEC EVFIYVSCAQ TALLDSKDFL APVITPFEAV LAFSRGREWT GEYLLDFKDL
401: ITLEKQEVVS TTEEARFSFI KGVYVEDNCP QENEEQSETS LALAEVTEKA LSIQNQHNDA VLYKGGAMSS IDYLKARSYR GLTGEYEGPV PNSILVGRTG
501: RAAGYSDEKT ENAQ

Best Arabidopsis Sequence Match ( AT3G59630.1 )
(BLAST)

001: MELEFESKYE INRTAEFIIS KSFTRIALQF PDELLKDSTK VVSALKSKTR LLTDREVRFF VMADTTYGSC CIDEVGALHI DSECVVHYGQ TCLSPTSVLP
101: AFFVFGKASI NVSSCVKHLI DYASKSDKPI MILYGLEYAH VIPQIREELG LSKTDSQLSV ANVLCSFISP SKDPRESMEH PRPYSESDSS DSLSSSRSYR
201: LGGLTWDLPE GSKIEDYLLF WIGSDSSAFA NVVLTFNGCD IVRYDAEEDS LVTEFYQQRR ILKRRYYLVE KAKDANIIGI LVGTLGVAGY LHMIHHMQAL
301: ISAAGKKSYI LAMGRPNPAK LANFPECDVF IYISCAQTAL LDSKEFMSPV ITPFEANLAF SRGSEWTGAY LMHFQDVINS VKSESEAHIG SEEPRFSFFQ
401: GGYVEDHKTN DQAKNGEEDT GETMTLVQAA EKALQLRGND HNSLTKQTAA KSGPEYFLNR VYRGLEINSE NTLPEPYIVG RSGKASGYKH E

Arabidopsis Description

AT3g59630/T16L24_180 [Source:UniProtKB/TrEMBL;Acc:Q9M1A5]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.