Factsheet for Bra007464.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71889	Canola	nucleus	96.1	95.32
AT3G59630.2	Thale cress	cytoskeleton, cytosol, nucleus	84.19	83.5
CDY69029	Canola	cytosol	37.58	83.18
CDY70834	Canola	cytosol	35.32	79.26
VIT_05s0094g00370.t01	Wine grape	cytosol	62.22	59.88
PGSC0003DMT400072523	Potato	cytosol	56.88	55.62
Solyc10g081540.1.1	Tomato	cytosol	56.47	55.22
KRH23572	Soybean	cytosol	46.41	54.33
GSMUA_Achr1P13430_001	Banana	cytosol	53.39	51.18
TraesCS4B01G083800.1	Wheat	cytosol, mitochondrion	53.18	51.08
EER90542	Sorghum	cytosol	53.18	50.39
Os11t0265600-00	Rice	cytosol	52.16	50.2
KRH09732	Soybean	cytosol, mitochondrion, nucleus	56.26	48.07
Zm00001d034797_P002	Maize	cytosol	52.57	47.76
HORVU4Hr1G013960.2	Barley	plastid	53.8	46.95
Bra010051.1-P	Field mustard	cytosol	16.02	17.33

Protein Annotations

MapMan:17.5.2.2.2	Gene3D:3.40.50.11840	Gene3D:3.40.50.11850	Gene3D:3.40.50.11860	EnsemblPlantsGene:Bra007464	EnsemblPlants:Bra007464.1
EnsemblPlants:Bra007464.1-P	ncoils:Coil	InterPro:DHP2_euk	InterPro:DPH1/DPH2	GO:GO:0003674	GO:GO:0003824
GO:GO:0006412	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0017183	GO:GO:0019538	UniProt:M4CTC1	PFAM:PF01866	PANTHER:PTHR10762
PANTHER:PTHR10762:SF2	TIGRFAMs:TIGR00272	TIGRFAMs:TIGR00322	UniParc:UPI0002542ED8	SEG:seg	:

Description

AT3G59630 (E=4e-240) | diphthamide synthesis DPH2 family protein

Coordinates

chrA09:-:29336086..29338518

Molecular Weight (calculated)

54369.6 Da

IEP (calculated)

5.168

GRAVY (calculated)

-0.239

Length

487 amino acids

Sequence
(BLAST)

001: MEMEFESRYE INRTVEFIIS KSFTRIALQF PDELLKESTK VVRALKSKLK EMNAENGRDV RFFVMADTTY GSCCVDEVGA LHIDSQCVVH YGQTCLSPTS
101: VLPAFFVFGK ASINVASCVK HLLDYMSKSN KPVLILYGLE YAHVIPSIQE ELGLSKPESQ LKFSVANVLC SFISPSKDPR ESMEHPVPSG EDSLSSSRNY
201: RLGGLTWDLP EGSKIEDYLL FWIGSDSSAF ANVVLTFNGC DVVRYDAEED SLVTEFTQQR RILKRRYYLV EKAKDANIIG ILVGTLGVAG YLHMIHHMQA
301: LISAAGKKSY ILAMGRPNPA KLANFPECDV FIYISCAQTA LLDSKEFMAP VITPFEANLA FSRGSEWTGA YLMHFQDVII NSSKPESEAE EEPRFSFFQG
401: GYVEDHNTND EAENGEEETM ALVQAAEKAL QLRGKDHNQL AKQTAAKSGP EYFLNRAYRG LEINSDNTTP EPFLVGRSGK ASGYKHE

Best Arabidopsis Sequence Match ( AT3G59630.1 )
(BLAST)

001: MELEFESKYE INRTAEFIIS KSFTRIALQF PDELLKDSTK VVSALKSKTR LLTDREVRFF VMADTTYGSC CIDEVGALHI DSECVVHYGQ TCLSPTSVLP
101: AFFVFGKASI NVSSCVKHLI DYASKSDKPI MILYGLEYAH VIPQIREELG LSKTDSQLSV ANVLCSFISP SKDPRESMEH PRPYSESDSS DSLSSSRSYR
201: LGGLTWDLPE GSKIEDYLLF WIGSDSSAFA NVVLTFNGCD IVRYDAEEDS LVTEFYQQRR ILKRRYYLVE KAKDANIIGI LVGTLGVAGY LHMIHHMQAL
301: ISAAGKKSYI LAMGRPNPAK LANFPECDVF IYISCAQTAL LDSKEFMSPV ITPFEANLAF SRGSEWTGAY LMHFQDVINS VKSESEAHIG SEEPRFSFFQ
401: GGYVEDHKTN DQAKNGEEDT GETMTLVQAA EKALQLRGND HNSLTKQTAA KSGPEYFLNR VYRGLEINSE NTLPEPYIVG RSGKASGYKH E

Arabidopsis Description

AT3g59630/T16L24_180 [Source:UniProtKB/TrEMBL;Acc:Q9M1A5]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.