Factsheet for VIT_05s0094g00370.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23572	Soybean	cytosol	54.55	66.35
CDX71889	Canola	nucleus	60.67	62.53
Bra007464.1-P	Field mustard	cytosol	59.88	62.22
Solyc10g081540.1.1	Tomato	cytosol	59.49	60.44
AT3G59630.2	Thale cress	cytoskeleton, cytosol, nucleus	58.5	60.29
PGSC0003DMT400072523	Potato	cytosol	59.29	60.24
GSMUA_Achr1P13430_001	Banana	cytosol	58.1	57.87
KRH09732	Soybean	cytosol, mitochondrion, nucleus	64.62	57.37
TraesCS4B01G083800.1	Wheat	cytosol, mitochondrion	54.74	54.64
Os11t0265600-00	Rice	cytosol	53.75	53.75
EER90542	Sorghum	cytosol	54.35	53.5
CDY70834	Canola	cytosol	22.33	52.07
Zm00001d034797_P002	Maize	cytosol	52.77	49.81
HORVU4Hr1G013960.2	Barley	plastid	54.74	49.64
CDY69029	Canola	cytosol	21.54	49.55
VIT_00s0270g00100.t01	Wine grape	plastid	16.01	17.57

Protein Annotations

EntrezGene:100262956	wikigene:100262956	MapMan:17.5.2.2.2	Gene3D:3.40.50.11840	Gene3D:3.40.50.11860	ProteinID:CBI24661
ProteinID:CBI24661.3	UniProt:D7T2D0	InterPro:DHP2_euk	InterPro:DPH1/DPH2	EMBL:FN595507	GO:GO:0003674
GO:GO:0003824	GO:GO:0006412	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0017183	GO:GO:0019538	EntrezGene:LOC100262956	wikigene:LOC100262956
PFAM:PF01866	PANTHER:PTHR10762	PANTHER:PTHR10762:SF2	TIGRFAMs:TIGR00272	TIGRFAMs:TIGR00322	UniParc:UPI0001BE26DA
ArrayExpress:VIT_05s0094g00370	EnsemblPlantsGene:VIT_05s0094g00370	EnsemblPlants:VIT_05s0094g00370.t01	RefSeq:XP_002273627	RefSeq:XP_002273627.2	SEG:seg

Description

2-(3-amino-3-carboxypropyl)histidine synthase subunit 2 [Source:UniProtKB/TrEMBL;Acc:D7T2D0]

Coordinates

chr5:-:23679847..23690833

Molecular Weight (calculated)

55507.7 Da

IEP (calculated)

4.936

GRAVY (calculated)

-0.163

Length

506 amino acids

Sequence
(BLAST)

001: MELESNYEIA LTADFIRSRN FTRVALQFPD ELLKDATRVV KALRDRLESP SESGSGDGKE VGLFVMADTT YGSCCVDEVG ASHINADCVV HYGHTCLSPT
101: SNLPAFFVFG KAPISISNCA ENLSTYALTQ GKHIMVLFGL EYSHAIEMIK EALMLESSKL SGSTSNLEFH FAEVMCSVMN PSKDCTTSNG HLGSVGSFTA
201: NEGFGKATGT RYSIGGLAWN LPEGHRMEDY LLVWIGADNS AFANVVLTFN GCDIVRYDAV DNRLVTDLSQ QRRILKRRYY LVEKAKDSNI IGLLVGTLGV
301: AGYLHMIRQM KELIAAAGKK AYTLVMGRPN PAKLANFPEC DVFIYVSCAQ TALLDSKEFL APVITPFEAM LAFNRGSQWT GAYVMEFRDL ISSSPVEVRN
401: QSEEARFSFL QGGYVEDFDL KETEDAEEDE DGALALAYAT EKALQVRDKH PNSLIKGTAK SGGEFFAARS YHGLEMHSND SSPEPYLIGR VGKASGYEGE
501: KGNENF

Best Arabidopsis Sequence Match ( AT3G59630.1 )
(BLAST)

001: MELEFESKYE INRTAEFIIS KSFTRIALQF PDELLKDSTK VVSALKSKTR LLTDREVRFF VMADTTYGSC CIDEVGALHI DSECVVHYGQ TCLSPTSVLP
101: AFFVFGKASI NVSSCVKHLI DYASKSDKPI MILYGLEYAH VIPQIREELG LSKTDSQLSV ANVLCSFISP SKDPRESMEH PRPYSESDSS DSLSSSRSYR
201: LGGLTWDLPE GSKIEDYLLF WIGSDSSAFA NVVLTFNGCD IVRYDAEEDS LVTEFYQQRR ILKRRYYLVE KAKDANIIGI LVGTLGVAGY LHMIHHMQAL
301: ISAAGKKSYI LAMGRPNPAK LANFPECDVF IYISCAQTAL LDSKEFMSPV ITPFEANLAF SRGSEWTGAY LMHFQDVINS VKSESEAHIG SEEPRFSFFQ
401: GGYVEDHKTN DQAKNGEEDT GETMTLVQAA EKALQLRGND HNSLTKQTAA KSGPEYFLNR VYRGLEINSE NTLPEPYIVG RSGKASGYKH E

Arabidopsis Description

AT3g59630/T16L24_180 [Source:UniProtKB/TrEMBL;Acc:Q9M1A5]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.