Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G083800.1 | Wheat | cytosol, mitochondrion | 84.95 | 93.49 |
| Os11t0265600-00 | Rice | cytosol | 71.51 | 78.85 |
| EER90542 | Sorghum | cytosol | 67.03 | 72.76 |
| Zm00001d034797_P002 | Maize | cytosol | 65.23 | 67.91 |
| GSMUA_Achr1P13430_001 | Banana | cytosol | 52.87 | 58.07 |
| VIT_05s0094g00370.t01 | Wine grape | cytosol | 49.64 | 54.74 |
| Bra007464.1-P | Field mustard | cytosol | 46.95 | 53.8 |
| CDX71889 | Canola | nucleus | 46.95 | 53.36 |
| AT3G59630.2 | Thale cress | cytoskeleton, cytosol, nucleus | 44.98 | 51.12 |
| KRH23572 | Soybean | cytosol | 37.28 | 50.0 |
| PGSC0003DMT400072523 | Potato | cytosol | 44.09 | 49.4 |
| Solyc10g081540.1.1 | Tomato | cytosol | 43.91 | 49.2 |
| KRH09732 | Soybean | cytosol, mitochondrion, nucleus | 46.95 | 45.96 |
| CDY69029 | Canola | cytosol | 17.74 | 45.0 |
| CDY70834 | Canola | cytosol | 17.38 | 44.7 |
| HORVU6Hr1G090270.1 | Barley | cytosol, peroxisome, plastid | 13.44 | 15.31 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G013960.2 | EnsemblPlantsGene:HORVU4Hr1G013960 | Gene3D:3.40.50.11840 | Gene3D:3.40.50.11860 | GO:GO:0006412 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0017183 | GO:GO:0019538 |
| InterPro:DHP2_euk | InterPro:DPH1/DPH2 | PANTHER:PTHR10762 | PANTHER:PTHR10762:SF2 | PFAM:PF01866 | SEG:seg |
| TIGRFAMs:TIGR00322 | UniParc:UPI000B474952 | UniProt:A0A287NAH8 | MapMan:17.5.2.2.2 | : | : |
Description
No Description!
Coordinates
chrchr4H:-:50297959..50303149
Molecular Weight (calculated)
61309.3 Da
IEP (calculated)
5.432
GRAVY (calculated)
-0.313
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: HMASFSSAQQ DRRRPKSKTL APSLPIRLSS PAALRFPPSE RDSLSPVNPP TMDDVSSRYE IPRTAEFLRG HAYTRVALQF PDELLKDAAA VARALRTELG
101: GGTKLFVMAD TAYNSCCVDE VGASNIDAQC VVHYGHSCMS PTSNLPAFFV LGKAPLDISS CCRSLLYCSR ESNKPVLALC GLEYAHALED LKRATVELCK
201: SDCQNSKIHY AEVLCSEMSP SSSPAAEEQC SQSNGSTRND GFPAHNDDLA TLVNSCCNVE GSTRKYNLGG LTWRISTDEK MDDYLLYWIG QDNSAFANVA
301: LTFNKCDIVR YDTIANQFSR DVSHLMKILR RRYYLVEKAK DASIVGILVG TLGVAGYLDI IEQMKNLIKA AGKKSYTLVM GRPNSAKLAN FPECEVFVYV
401: SCAQTALLDS KEFLAPVITP FEAVLAFSRG REWTGEYLLD FKELISSEKP EVASRSEEAR FSFIKGGYVE DDCPEENEEH SETSLALAEL TEKALSTRNQ
501: NSDAVLYQGG AKSAIEYLQA RSYRGMTGEY EGPAPDSVLV GRTGRAAGYS DEKTKSPQ
101: GGTKLFVMAD TAYNSCCVDE VGASNIDAQC VVHYGHSCMS PTSNLPAFFV LGKAPLDISS CCRSLLYCSR ESNKPVLALC GLEYAHALED LKRATVELCK
201: SDCQNSKIHY AEVLCSEMSP SSSPAAEEQC SQSNGSTRND GFPAHNDDLA TLVNSCCNVE GSTRKYNLGG LTWRISTDEK MDDYLLYWIG QDNSAFANVA
301: LTFNKCDIVR YDTIANQFSR DVSHLMKILR RRYYLVEKAK DASIVGILVG TLGVAGYLDI IEQMKNLIKA AGKKSYTLVM GRPNSAKLAN FPECEVFVYV
401: SCAQTALLDS KEFLAPVITP FEAVLAFSRG REWTGEYLLD FKELISSEKP EVASRSEEAR FSFIKGGYVE DDCPEENEEH SETSLALAEL TEKALSTRNQ
501: NSDAVLYQGG AKSAIEYLQA RSYRGMTGEY EGPAPDSVLV GRTGRAAGYS DEKTKSPQ
001: MELEFESKYE INRTAEFIIS KSFTRIALQF PDELLKDSTK VVSALKSKTR LLTDREVRFF VMADTTYGSC CIDEVGALHI DSECVVHYGQ TCLSPTSVLP
101: AFFVFGKASI NVSSCVKHLI DYASKSDKPI MILYGLEYAH VIPQIREELG LSKTDSQLSV ANVLCSFISP SKDPRESMEH PRPYSESDSS DSLSSSRSYR
201: LGGLTWDLPE GSKIEDYLLF WIGSDSSAFA NVVLTFNGCD IVRYDAEEDS LVTEFYQQRR ILKRRYYLVE KAKDANIIGI LVGTLGVAGY LHMIHHMQAL
301: ISAAGKKSYI LAMGRPNPAK LANFPECDVF IYISCAQTAL LDSKEFMSPV ITPFEANLAF SRGSEWTGAY LMHFQDVINS VKSESEAHIG SEEPRFSFFQ
401: GGYVEDHKTN DQAKNGEEDT GETMTLVQAA EKALQLRGND HNSLTKQTAA KSGPEYFLNR VYRGLEINSE NTLPEPYIVG RSGKASGYKH E
101: AFFVFGKASI NVSSCVKHLI DYASKSDKPI MILYGLEYAH VIPQIREELG LSKTDSQLSV ANVLCSFISP SKDPRESMEH PRPYSESDSS DSLSSSRSYR
201: LGGLTWDLPE GSKIEDYLLF WIGSDSSAFA NVVLTFNGCD IVRYDAEEDS LVTEFYQQRR ILKRRYYLVE KAKDANIIGI LVGTLGVAGY LHMIHHMQAL
301: ISAAGKKSYI LAMGRPNPAK LANFPECDVF IYISCAQTAL LDSKEFMSPV ITPFEANLAF SRGSEWTGAY LMHFQDVINS VKSESEAHIG SEEPRFSFFQ
401: GGYVEDHKTN DQAKNGEEDT GETMTLVQAA EKALQLRGND HNSLTKQTAA KSGPEYFLNR VYRGLEINSE NTLPEPYIVG RSGKASGYKH E
Arabidopsis Description
AT3g59630/T16L24_180 [Source:UniProtKB/TrEMBL;Acc:Q9M1A5]
SUBAcon: [cytoskeleton,nucleus,cytosol]
SUBAcon: [cytoskeleton,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.