CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69029	Canola	cytosol	89.4	88.18
CDX71889	Canola	nucleus	87.56	38.7
Bra007464.1-P	Field mustard	cytosol	79.26	35.32
AT3G59630.2	Thale cress	cytoskeleton, cytosol, nucleus	69.12	30.55
VIT_05s0094g00370.t01	Wine grape	cytosol	52.07	22.33
GSMUA_Achr1P13430_001	Banana	cytosol	44.7	19.09
Solyc10g081540.1.1	Tomato	cytosol	43.78	19.08
TraesCS4B01G083800.1	Wheat	cytosol, mitochondrion	44.24	18.93
EER90542	Sorghum	cytosol	44.24	18.68
Zm00001d034797_P002	Maize	cytosol	46.08	18.66
PGSC0003DMT400072523	Potato	cytosol	41.94	18.27
Os11t0265600-00	Rice	cytosol	41.47	17.79
HORVU4Hr1G013960.2	Barley	plastid	44.7	17.38
KRH09732	Soybean	cytosol, mitochondrion, nucleus	44.24	16.84
KRH23572	Soybean	cytosol	30.88	16.11
CDX86937	Canola	cytosol	20.28	9.76
CDY00247	Canola	cytosol	19.35	9.33

Protein Annotations

MapMan:17.5.2.2.2	Gene3D:3.40.50.11840	GO:A0A078JVP7	UniProt:A0A078JVP7	EnsemblPlants:CDY70834	ProteinID:CDY70834
ProteinID:CDY70834.1	ncoils:Coil	InterPro:DHP2_euk	InterPro:DPH1/DPH2	GO:GO:0006412	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0017183	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00007776001	PFAM:PF01866	PANTHER:PTHR10762	PANTHER:PTHR10762:SF2	TIGRFAMs:TIGR00322	UniPathway:UPA00559
UniParc:UPI0004EE9F74	:	:	:	:	:

Description

BnaCnng70000DBnaCnng70000D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JVP7]

Coordinates

chrLK043461:+:2110..3021

Molecular Weight (calculated)

24468.3 Da

IEP (calculated)

5.649

GRAVY (calculated)

-0.243

Length

217 amino acids

Sequence
(BLAST)

001: MEMEFESRYE INRTVEFIIS KSFTRIALQF PDELLKESTK VVRALKSKLK EMNSENDREV RFFVMADTTY GSCCVDEVGA LHIDSQCVVH YGQTCLSPTS
101: VLPAFFVFGK ASIKVSSCVK HLLDHTSKSD KPVMILYGLE YAHVIPSIQE ELRLSKPESQ LKFSVANVLC SFITPSKDPR ESMEHPVPSG EDSLSSSRNY
201: RLGGLTWDLP EGSKIED

Best Arabidopsis Sequence Match ( AT3G59630.1 )
(BLAST)

001: MELEFESKYE INRTAEFIIS KSFTRIALQF PDELLKDSTK VVSALKSKTR LLTDREVRFF VMADTTYGSC CIDEVGALHI DSECVVHYGQ TCLSPTSVLP
101: AFFVFGKASI NVSSCVKHLI DYASKSDKPI MILYGLEYAH VIPQIREELG LSKTDSQLSV ANVLCSFISP SKDPRESMEH PRPYSESDSS DSLSSSRSYR
201: LGGLTWDLPE GSKIEDYLLF WIGSDSSAFA NVVLTFNGCD IVRYDAEEDS LVTEFYQQRR ILKRRYYLVE KAKDANIIGI LVGTLGVAGY LHMIHHMQAL
301: ISAAGKKSYI LAMGRPNPAK LANFPECDVF IYISCAQTAL LDSKEFMSPV ITPFEANLAF SRGSEWTGAY LMHFQDVINS VKSESEAHIG SEEPRFSFFQ
401: GGYVEDHKTN DQAKNGEEDT GETMTLVQAA EKALQLRGND HNSLTKQTAA KSGPEYFLNR VYRGLEINSE NTLPEPYIVG RSGKASGYKH E

Arabidopsis Description

AT3g59630/T16L24_180 [Source:UniProtKB/TrEMBL;Acc:Q9M1A5]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.