CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70834	Canola	cytosol	88.18	89.4
Bra007464.1-P	Field mustard	cytosol	83.18	37.58
CDX71889	Canola	nucleus	78.64	35.23
AT3G59630.2	Thale cress	cytoskeleton, cytosol, nucleus	68.64	30.75
VIT_05s0094g00370.t01	Wine grape	cytosol	49.55	21.54
EER90542	Sorghum	cytosol	45.45	19.46
TraesCS4B01G083800.1	Wheat	cytosol, mitochondrion	44.55	19.33
Zm00001d034797_P002	Maize	cytosol	46.82	19.22
Solyc10g081540.1.1	Tomato	cytosol	43.18	19.08
PGSC0003DMT400072523	Potato	cytosol	42.73	18.88
GSMUA_Achr1P13430_001	Banana	cytosol	42.73	18.5
Os11t0265600-00	Rice	cytosol	41.82	18.18
HORVU4Hr1G013960.2	Barley	plastid	45.0	17.74
KRH09732	Soybean	cytosol, mitochondrion, nucleus	42.73	16.49
KRH23572	Soybean	cytosol	30.45	16.11
CDX86937	Canola	cytosol	20.45	9.98
CDY00247	Canola	cytosol	20.0	9.78

Protein Annotations

MapMan:17.5.2.2.2	Gene3D:3.40.50.11840	Gene3D:3.40.50.11850	GO:A0A078JQE9	UniProt:A0A078JQE9	EnsemblPlants:CDY69029
ProteinID:CDY69029	ProteinID:CDY69029.1	ncoils:Coil	InterPro:DHP2_euk	InterPro:DPH1/DPH2	GO:GO:0006412
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0017183
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00082039001	PFAM:PF01866	PANTHER:PTHR10762	PANTHER:PTHR10762:SF2	TIGRFAMs:TIGR00322
UniPathway:UPA00559	UniParc:UPI0004EE3EE0	SEG:seg	:	:	:

Description

BnaAnng29160DBnaAnng29160D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JQE9]

Coordinates

chrLK038474:-:3..1033

Molecular Weight (calculated)

24598.5 Da

IEP (calculated)

5.360

GRAVY (calculated)

-0.120

Length

220 amino acids

Sequence
(BLAST)

001: MEMEFESRYE INRTAEFIIS KSFTRIALQF PDELLKESTK VVRALKSKLK EMNAENGRDV RFFVMADTTY GSCCVDEVGA LHIDSQCVVH YGQTCLSSTS
101: VLPAFFVFGK ASINVASCVK HLLDYMSKSN KPVLILYGLE YAHVIPSIQE ELGLSKPESQ LKFSVANVLC SFISPSKDPR ESMEHPVPSG EDSLSSSRSY
201: RLGGLTWDLP EGSKIEDYLL

Best Arabidopsis Sequence Match ( AT3G59630.1 )
(BLAST)

001: MELEFESKYE INRTAEFIIS KSFTRIALQF PDELLKDSTK VVSALKSKTR LLTDREVRFF VMADTTYGSC CIDEVGALHI DSECVVHYGQ TCLSPTSVLP
101: AFFVFGKASI NVSSCVKHLI DYASKSDKPI MILYGLEYAH VIPQIREELG LSKTDSQLSV ANVLCSFISP SKDPRESMEH PRPYSESDSS DSLSSSRSYR
201: LGGLTWDLPE GSKIEDYLLF WIGSDSSAFA NVVLTFNGCD IVRYDAEEDS LVTEFYQQRR ILKRRYYLVE KAKDANIIGI LVGTLGVAGY LHMIHHMQAL
301: ISAAGKKSYI LAMGRPNPAK LANFPECDVF IYISCAQTAL LDSKEFMSPV ITPFEANLAF SRGSEWTGAY LMHFQDVINS VKSESEAHIG SEEPRFSFFQ
401: GGYVEDHKTN DQAKNGEEDT GETMTLVQAA EKALQLRGND HNSLTKQTAA KSGPEYFLNR VYRGLEINSE NTLPEPYIVG RSGKASGYKH E

Arabidopsis Description

AT3g59630/T16L24_180 [Source:UniProtKB/TrEMBL;Acc:Q9M1A5]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.