CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007464.1-P	Field mustard	cytosol	95.32	96.1
CDY70834	Canola	cytosol	38.7	87.56
AT3G59630.2	Thale cress	cytoskeleton, cytosol, nucleus	82.08	82.08
CDY69029	Canola	cytosol	35.23	78.64
VIT_05s0094g00370.t01	Wine grape	cytosol	62.53	60.67
Solyc10g081540.1.1	Tomato	cytosol	55.8	55.02
PGSC0003DMT400072523	Potato	cytosol	54.79	54.02
KRH23572	Soybean	cytosol	45.62	53.85
TraesCS4B01G083800.1	Wheat	cytosol, mitochondrion	52.95	51.28
GSMUA_Achr1P13430_001	Banana	cytosol	52.95	51.18
Os11t0265600-00	Rice	cytosol	51.93	50.4
EER90542	Sorghum	cytosol	52.55	50.19
KRH09732	Soybean	cytosol, mitochondrion, nucleus	55.8	48.07
Zm00001d034797_P002	Maize	cytosol	51.73	47.39
HORVU4Hr1G013960.2	Barley	plastid	53.36	46.95
CDX86937	Canola	cytosol	15.89	17.29
CDY00247	Canola	cytosol	15.48	16.89

Protein Annotations

MapMan:17.5.2.2.2	Gene3D:3.40.50.11840	Gene3D:3.40.50.11850	Gene3D:3.40.50.11860	GO:A0A078C6U7	EnsemblPlants:CDX71889
ProteinID:CDX71889	ProteinID:CDX71889.1	ncoils:Coil	InterPro:DHP2_euk	InterPro:DPH1/DPH2	GO:GO:0006412
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0017183
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00155628001	PFAM:PF01866	PANTHER:PTHR10762	PANTHER:PTHR10762:SF2	TIGRFAMs:TIGR00272
TIGRFAMs:TIGR00322	UniPathway:UPA00559	UniParc:UPI0004EC9B3A	SEG:seg	:	:

Description

BnaC08g29850D

Coordinates

chrLK031795:+:1036495..1038930

Molecular Weight (calculated)

54920.1 Da

IEP (calculated)

5.274

GRAVY (calculated)

-0.291

Length

491 amino acids

Sequence
(BLAST)

001: MEMEFESRYE INRTVEFIIS KSFTRIALQF PDELLKESTK VVRALKSKLK EMNSENDREV RFFVMADTTY GSCCVDEVGA LHIDSQCVVH YGQTCLSPTS
101: VLPAFFVFGK ASIKVSSCVK HLLDHTSKSD KPVMILYGLE YAHVIPSIQE ELRLSKPESQ LKFSVANVLC SFITPSKDPR ESMEHPVPSG EDSLSSSRNY
201: RLGGLTWDLP EGSKIEDYLL FWIGSDNSAF ANVVLTFNGC DVVRYDAEEG SLVTEFTQQR RILKRRYYLV EKAKDANIIG ILVGTLGVAG YLHMIHHMQA
301: LISAAGKKSY ILAMGRPNPA KLANFPECDV FIYISCAQTA LLDSKEFMAP VITPFEANLA FSRGSEWTGA YLMHFQDVII NSSKPESEAE NGSEEEPRFS
401: FFQGGYVEDH NTNDEAENGE EETMALVQAA EKALQLRGKD HNQLAKQTAA KSGPEYFLNR AYRGLEINSD NTTPEPFLVG RSGKASGYKH E

Best Arabidopsis Sequence Match ( AT3G59630.1 )
(BLAST)

001: MELEFESKYE INRTAEFIIS KSFTRIALQF PDELLKDSTK VVSALKSKTR LLTDREVRFF VMADTTYGSC CIDEVGALHI DSECVVHYGQ TCLSPTSVLP
101: AFFVFGKASI NVSSCVKHLI DYASKSDKPI MILYGLEYAH VIPQIREELG LSKTDSQLSV ANVLCSFISP SKDPRESMEH PRPYSESDSS DSLSSSRSYR
201: LGGLTWDLPE GSKIEDYLLF WIGSDSSAFA NVVLTFNGCD IVRYDAEEDS LVTEFYQQRR ILKRRYYLVE KAKDANIIGI LVGTLGVAGY LHMIHHMQAL
301: ISAAGKKSYI LAMGRPNPAK LANFPECDVF IYISCAQTAL LDSKEFMSPV ITPFEANLAF SRGSEWTGAY LMHFQDVINS VKSESEAHIG SEEPRFSFFQ
401: GGYVEDHKTN DQAKNGEEDT GETMTLVQAA EKALQLRGND HNSLTKQTAA KSGPEYFLNR VYRGLEINSE NTLPEPYIVG RSGKASGYKH E

Arabidopsis Description

AT3g59630/T16L24_180 [Source:UniProtKB/TrEMBL;Acc:Q9M1A5]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.