CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010051.1-P	Field mustard	cytosol	99.78	99.78
CDX86937	Canola	cytosol	96.44	96.23
AT5G62030.1	Thale cress	cytosol	90.89	90.29
VIT_00s0270g00100.t01	Wine grape	plastid	67.33	65.73
KRH24351	Soybean	cytosol	67.11	65.37
KRH39817	Soybean	cytosol	66.44	64.03
PGSC0003DMT400043231	Potato	cytosol	64.89	60.71
Solyc06g066300.1.1	Tomato	cytosol	65.11	60.66
TraesCS6D01G371300.1	Wheat	cytosol	53.33	50.74
TraesCS6B01G425800.1	Wheat	cytosol	53.33	50.42
TraesCS6A01G386700.1	Wheat	cytosol	52.89	50.32
Os02t0815600-01	Rice	cytosol, endoplasmic reticulum, peroxisome	52.0	49.37
HORVU6Hr1G090270.1	Barley	cytosol, peroxisome, plastid	53.33	48.98
Zm00001d018469_P001	Maize	cytosol, plastid	52.22	48.76
EES07748	Sorghum	plastid	52.44	48.46
GSMUA_Achr5P17750_001	Banana	mitochondrion, plasma membrane	50.0	48.18
CDY69029	Canola	cytosol	9.78	20.0
CDY70834	Canola	cytosol	9.33	19.35
CDX71889	Canola	nucleus	16.89	15.48

Protein Annotations

MapMan:17.5.2.2.1	Gene3D:3.40.50.11840	Gene3D:3.40.50.11850	Gene3D:3.40.50.11860	GO:A0A078EGN2	EnsemblPlants:CDY00247
ProteinID:CDY00247	ProteinID:CDY00247.1	InterPro:DPH1/DPH2	InterPro:DPH1/DPH2_euk_archaea	GO:GO:0006412	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0017183	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00109798001	InterPro:IPR002885	PFAM:PF01866	PIRSF:PIRSF004967	PFscan:PS51375	PANTHER:PTHR10762
PANTHER:PTHR10762:SF1	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00322	UniPathway:UPA00559	UniParc:UPI0004EDFAF4	SEG:seg

Description

BnaA06g21480D

Coordinates

chrLK031917:+:403055..404908

Molecular Weight (calculated)

49762.8 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.102

Length

450 amino acids

Sequence
(BLAST)

001: MELSDPTNAK SNKAKQPPKR FIKNQIPESI LNDASLNAAI SLLPSIYQFE VHKCVWRISS TNAKRIAIQL PEGLLMYALT LSDIFTSFAG ASHCFVLGDV
101: TYGACCVDDF SASALGADLL IHYGHSCLVP IDSTKIPCLY VFVEIQIDVK CLLNTIHLNL ASDIKSIILA GTIQFTSAIR AVKPDLEKQG FSVLIPQSKP
201: LSAGEVLGCT APKVSRFDDH KDAVLVFVAD GRFHLEAFMI ANPKIKAFRY DPYLGKLFLE EYDHKGMRET RRRAITRAKD AKTWGIVLGT LGRQGNPKIL
301: ERLEKKMEEK GIDSTVVLMS ELSPTRVALF EDSVDAWVQI ACPRLSIDWG EAFLKPLLTT FEAEIALGFI PGWWENGSLS RVGSSSSGCC KEDKETSCAC
401: RDDTKDDDGV LDGDYPMDYY AQEGGEWNSS YLKKSSRPIR RNPLPSSSVV

Best Arabidopsis Sequence Match ( AT5G62030.1 )
(BLAST)

001: MELSDPNNGK TNKPKQPPKR FIKNQIPDSI LGDASLNAAI SILPSIYHFE VHKCVWRIKT SNAKRIALQL PEGLLMYALT LSDIFTSFAG ASHCFVLGDV
101: TYGACCVDDF SACALGADLL IHYGHSCLVP IDSTKIPCLY VFVEIQIDVK CLLNTIHLNL ASDVKNIILA GTIQFTSAIR AVKPELEKQG FNVLIPQSKP
201: LSAGEVLGCT APKVKTVEDC KDQVLVFVAD GRFHLEAFMI ANPKIKAFRY DPYLGKLFLE EYDHKGMRET RMRAIARARE AKTWGIVLGT LGRQGNPKIL
301: ERLEKKMMEK GIDSTVVLMS ELSPTRVALF EDSVDAWVQI ACPRLSIDWG EAFLKPLLTT FEAEIALGFI RGWWENDSSS RVNSSSGCCK EDKETSCACK
401: NENVKDDKKD NDGALDGDYP MDYYAQEGGE WNSSYLKKSS RPIRRNPLPS SVV

Arabidopsis Description

Diphthamide synthesis DPH2 family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.