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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX86937 Canola cytosol 90.73 91.13
Bra010051.1-P Field mustard cytosol 90.29 90.89
CDY00247 Canola cytosol 90.29 90.89
VIT_00s0270g00100.t01 Wine grape plastid 66.67 65.51
KRH24351 Soybean cytosol 66.0 64.72
KRH39817 Soybean cytosol 65.12 63.17
PGSC0003DMT400043231 Potato cytosol 65.78 61.95
Solyc06g066300.1.1 Tomato cytosol 65.78 61.7
TraesCS6D01G371300.1 Wheat cytosol 52.1 49.89
TraesCS6B01G425800.1 Wheat cytosol 52.32 49.79
TraesCS6A01G386700.1 Wheat cytosol 51.66 49.47
Os02t0815600-01 Rice cytosol, endoplasmic reticulum, peroxisome 51.21 48.95
HORVU6Hr1G090270.1 Barley cytosol, peroxisome, plastid 52.32 48.37
Zm00001d018469_P001 Maize cytosol, plastid 51.21 48.13
GSMUA_Achr5P17750_001 Banana mitochondrion, plasma membrane 49.45 47.97
EES07748 Sorghum plastid 51.43 47.84
AT3G59630.2 Thale cress cytoskeleton, cytosol, nucleus 18.1 16.7
Protein Annotations
MapMan:17.5.2.2.1Gene3D:3.40.50.11840Gene3D:3.40.50.11850Gene3D:3.40.50.11860EntrezGene:836323UniProt:A0A178UKW5
ProteinID:AED97553.1EMBL:AK227098ArrayExpress:AT5G62030EnsemblPlantsGene:AT5G62030RefSeq:AT5G62030TAIR:AT5G62030
RefSeq:AT5G62030-TAIR-GEnsemblPlants:AT5G62030.1TAIR:AT5G62030.1EMBL:AY091063EMBL:AY117320Unigene:At.29074
InterPro:DPH1/DPH2InterPro:DPH1/DPH2_euk_archaeaGO:GO:0006412GO:GO:0006464GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0017183GO:GO:0019538RefSeq:NP_201009.1ProteinID:OAO94666.1
PFAM:PF01866PIRSF:PIRSF004967PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281PANTHER:PTHR10762PANTHER:PTHR10762:SF1UniProt:Q8RWW3
TIGRFAMs:TIGR00322UniParc:UPI00000A39F8SEG:seg:::
Description
Diphthamide synthesis DPH2 family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWW3]
Coordinates
chr5:+:24918479..24920955
Molecular Weight (calculated)
50343.7 Da
IEP (calculated)
7.106
GRAVY (calculated)
-0.149
Length
453 amino acids
Sequence
(BLAST)
001: MELSDPNNGK TNKPKQPPKR FIKNQIPDSI LGDASLNAAI SILPSIYHFE VHKCVWRIKT SNAKRIALQL PEGLLMYALT LSDIFTSFAG ASHCFVLGDV
101: TYGACCVDDF SACALGADLL IHYGHSCLVP IDSTKIPCLY VFVEIQIDVK CLLNTIHLNL ASDVKNIILA GTIQFTSAIR AVKPELEKQG FNVLIPQSKP
201: LSAGEVLGCT APKVKTVEDC KDQVLVFVAD GRFHLEAFMI ANPKIKAFRY DPYLGKLFLE EYDHKGMRET RMRAIARARE AKTWGIVLGT LGRQGNPKIL
301: ERLEKKMMEK GIDSTVVLMS ELSPTRVALF EDSVDAWVQI ACPRLSIDWG EAFLKPLLTT FEAEIALGFI RGWWENDSSS RVNSSSGCCK EDKETSCACK
401: NENVKDDKKD NDGALDGDYP MDYYAQEGGE WNSSYLKKSS RPIRRNPLPS SVV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.