CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39817	Soybean	cytosol	82.25	81.37
VIT_00s0270g00100.t01	Wine grape	plastid	67.32	67.46
Bra010051.1-P	Field mustard	cytosol	65.37	67.11
CDY00247	Canola	cytosol	65.37	67.11
CDX86937	Canola	cytosol	64.72	66.3
AT5G62030.1	Thale cress	cytosol	64.72	66.0
Solyc06g066300.1.1	Tomato	cytosol	64.07	61.28
PGSC0003DMT400043231	Potato	cytosol	63.42	60.91
TraesCS6A01G386700.1	Wheat	cytosol	51.08	49.89
TraesCS6D01G371300.1	Wheat	cytosol	51.08	49.89
TraesCS6B01G425800.1	Wheat	cytosol	51.08	49.58
Zm00001d018469_P001	Maize	cytosol, plastid	51.52	49.38
GSMUA_Achr5P17750_001	Banana	mitochondrion, plasma membrane	49.78	49.25
Os02t0815600-01	Rice	cytosol, endoplasmic reticulum, peroxisome	50.43	49.16
EES07748	Sorghum	plastid	51.3	48.67
HORVU6Hr1G090270.1	Barley	cytosol, peroxisome, plastid	51.08	48.16
KRH23572	Soybean	cytosol	14.5	16.11
KRH09732	Soybean	cytosol, mitochondrion, nucleus	18.4	14.91

Protein Annotations

MapMan:17.5.2.2.1	Gene3D:3.40.50.11840	Gene3D:3.40.50.11850	Gene3D:3.40.50.11860	EMBL:ACUP02007174	InterPro:DPH1/DPH2
InterPro:DPH1/DPH2_euk_archaea	EnsemblPlantsGene:GLYMA_12G035900	GO:GO:0006412	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0017183	GO:GO:0019538	UniProt:I1LPW0	EnsemblPlants:KRH24351
ProteinID:KRH24351	ProteinID:KRH24351.1	PFAM:PF01866	PIRSF:PIRSF004967	PANTHER:PTHR10762	PANTHER:PTHR10762:SF1
TIGRFAMs:TIGR00322	UniParc:UPI00023CBD24	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:2628145..2631033

Molecular Weight (calculated)

50767.3 Da

IEP (calculated)

5.731

GRAVY (calculated)

-0.005

Length

462 amino acids

Sequence
(BLAST)

001: MEKLEAENVL VLPSEQPNNN RPKPKPKRFV KNQIPDSILN NPLLSAAISV LPSNYNFEVH KCVWRVLSTG AKRVALQFPE GLLMYSLPLS DIFTTFAGVT
101: HCFVLADVTY GACCVDDLAA SALGADLLIH YGHSCLVPID ATTIPCLYVF VDIKIDVPHF VDTLSLNLLA QTKTLVVAGT IQFASAIRAA KPQLEELGFR
201: VLIPQSKPLS AGEVLGCTAP KVSSSKLLGG GGDIGECVLV FVADGRFHLE AFMIANPGIR AFRYDPYMGK LFLEEYDHLG MKRSRKNAIF KAREARSWGL
301: VLGTLGRQGN PRILERLERM MRERGLDYTV VLMSEMSPTR IALFEDSLDA WIQIACPRLS IDWGEAFVKP VLTPFEAEVA LGVIPGWWEK NEVCEEGEGC
401: CNKSGSCCED AKGGEDFGGD YPMDYYAQDG GEWNSSYVKK STRPARRVSV SSVADTAISQ QP

Best Arabidopsis Sequence Match ( AT5G62030.1 )
(BLAST)

001: MELSDPNNGK TNKPKQPPKR FIKNQIPDSI LGDASLNAAI SILPSIYHFE VHKCVWRIKT SNAKRIALQL PEGLLMYALT LSDIFTSFAG ASHCFVLGDV
101: TYGACCVDDF SACALGADLL IHYGHSCLVP IDSTKIPCLY VFVEIQIDVK CLLNTIHLNL ASDVKNIILA GTIQFTSAIR AVKPELEKQG FNVLIPQSKP
201: LSAGEVLGCT APKVKTVEDC KDQVLVFVAD GRFHLEAFMI ANPKIKAFRY DPYLGKLFLE EYDHKGMRET RMRAIARARE AKTWGIVLGT LGRQGNPKIL
301: ERLEKKMMEK GIDSTVVLMS ELSPTRVALF EDSVDAWVQI ACPRLSIDWG EAFLKPLLTT FEAEIALGFI RGWWENDSSS RVNSSSGCCK EDKETSCACK
401: NENVKDDKKD NDGALDGDYP MDYYAQEGGE WNSSYLKKSS RPIRRNPLPS SVV

Arabidopsis Description

Diphthamide synthesis DPH2 family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.