Factsheet for VIT_00s0270g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 1
cytosol 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010051.1-P	Field mustard	cytosol	65.73	67.33
CDY00247	Canola	cytosol	65.73	67.33
KRH24351	Soybean	cytosol	67.46	67.32
CDX86937	Canola	cytosol	65.73	67.18
AT5G62030.1	Thale cress	cytosol	65.51	66.67
KRH39817	Soybean	cytosol	64.86	64.03
Solyc06g066300.1.1	Tomato	cytosol	65.08	62.11
PGSC0003DMT400043231	Potato	cytosol	64.43	61.75
GSMUA_Achr5P17750_001	Banana	mitochondrion, plasma membrane	50.54	49.89
TraesCS6A01G386700.1	Wheat	cytosol	50.98	49.68
TraesCS6D01G371300.1	Wheat	cytosol	50.98	49.68
TraesCS6B01G425800.1	Wheat	cytosol	51.19	49.58
Zm00001d018469_P001	Maize	cytosol, plastid	50.98	48.76
Os02t0815600-01	Rice	cytosol, endoplasmic reticulum, peroxisome	50.11	48.73
EES07748	Sorghum	plastid	50.54	47.84
HORVU6Hr1G090270.1	Barley	cytosol, peroxisome, plastid	50.54	47.55
VIT_05s0094g00370.t01	Wine grape	cytosol	17.57	16.01

Protein Annotations

EntrezGene:100252989	wikigene:100252989	MapMan:17.5.2.2.1	Gene3D:3.40.50.11840	Gene3D:3.40.50.11850	Gene3D:3.40.50.11860
ProteinID:CCB55922	ProteinID:CCB55922.1	InterPro:DPH1/DPH2	InterPro:DPH1/DPH2_euk_archaea	UniProt:F6HML7	EMBL:FN595994
GO:GO:0006412	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0017183	GO:GO:0019538	EntrezGene:LOC100252989	wikigene:LOC100252989	PFAM:PF01866	PIRSF:PIRSF004967
PANTHER:PTHR10762	PANTHER:PTHR10762:SF1	TIGRFAMs:TIGR00322	UniParc:UPI0001985EEA	ArrayExpress:VIT_00s0270g00100	EnsemblPlantsGene:VIT_00s0270g00100
EnsemblPlants:VIT_00s0270g00100.t01	unigene:Vvi.25189	RefSeq:XP_002265458	RefSeq:XP_002265458.1	RefSeq:XP_010646701.1	RefSeq:XP_010646702.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:19969368..19970902

Molecular Weight (calculated)

50368.5 Da

IEP (calculated)

7.064

GRAVY (calculated)

-0.011

Length

461 amino acids

Sequence
(BLAST)

001: MEQQRDTVLV ASQNPNPVSF TKKSSSSSGP KRFVKNQIPD SIINNAALNA AIALLPSNYN FEVHKCVWRI LSSRAKRVAL QFPEGLLMYS LHLSDIFTSY
101: AGADHCLVLG DVTYGACCVD DLSAAALEAD LLIHYGHSCL VPIDATSIPC LYVFVEIAID VDLLIGTVKL NLPPAGQIVL AGTIQFSSAI RAAKPELEKA
201: GFRVLIPQSK PLSAGEVLGC TAPKISKTSF ISDDVVAVFV ADGRFHLEAF MIANPAIKAY RYDPYIGRLL LEEYDHKGMK DSRKNAILKA REGKNWGIVL
301: GTLGRQGNPR ILNMLQDRMR EKGFSWTVVL MSEISPARVL LFGDSVDAWI QIACPRLSID WGDAFGKPLL NPFEAEIALG FIPGWWEKAS IANSDCIKNG
401: LCCNDNCDNG VCAKDKVDVS QDYPMDYYAQ DGGEWNSSYA KKSTRPSRRN VSSCTGNGAI S

Best Arabidopsis Sequence Match ( AT5G62030.1 )
(BLAST)

001: MELSDPNNGK TNKPKQPPKR FIKNQIPDSI LGDASLNAAI SILPSIYHFE VHKCVWRIKT SNAKRIALQL PEGLLMYALT LSDIFTSFAG ASHCFVLGDV
101: TYGACCVDDF SACALGADLL IHYGHSCLVP IDSTKIPCLY VFVEIQIDVK CLLNTIHLNL ASDVKNIILA GTIQFTSAIR AVKPELEKQG FNVLIPQSKP
201: LSAGEVLGCT APKVKTVEDC KDQVLVFVAD GRFHLEAFMI ANPKIKAFRY DPYLGKLFLE EYDHKGMRET RMRAIARARE AKTWGIVLGT LGRQGNPKIL
301: ERLEKKMMEK GIDSTVVLMS ELSPTRVALF EDSVDAWVQI ACPRLSIDWG EAFLKPLLTT FEAEIALGFI RGWWENDSSS RVNSSSGCCK EDKETSCACK
401: NENVKDDKKD NDGALDGDYP MDYYAQEGGE WNSSYLKKSS RPIRRNPLPS SVV

Arabidopsis Description

Diphthamide synthesis DPH2 family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.