Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytoskeleton 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007464.1-P | Field mustard | cytosol | 83.5 | 84.19 |
| CDX71889 | Canola | nucleus | 82.08 | 82.08 |
| CDY70834 | Canola | cytosol | 30.55 | 69.12 |
| CDY69029 | Canola | cytosol | 30.75 | 68.64 |
| VIT_05s0094g00370.t01 | Wine grape | cytosol | 60.29 | 58.5 |
| KRH23572 | Soybean | cytosol | 46.03 | 54.33 |
| PGSC0003DMT400072523 | Potato | cytosol | 53.56 | 52.81 |
| Solyc10g081540.1.1 | Tomato | cytosol | 53.36 | 52.61 |
| GSMUA_Achr1P13430_001 | Banana | cytosol | 51.73 | 50.0 |
| TraesCS4B01G083800.1 | Wheat | cytosol, mitochondrion | 51.32 | 49.7 |
| Os11t0265600-00 | Rice | cytosol | 50.51 | 49.01 |
| EER90542 | Sorghum | cytosol | 50.92 | 48.64 |
| Zm00001d034797_P002 | Maize | cytosol | 52.34 | 47.95 |
| KRH09732 | Soybean | cytosol, mitochondrion, nucleus | 55.6 | 47.89 |
| HORVU4Hr1G013960.2 | Barley | plastid | 51.12 | 44.98 |
| AT5G62030.1 | Thale cress | cytosol | 16.7 | 18.1 |
Protein Annotations
| MapMan:17.5.2.2.2 | Gene3D:3.40.50.11840 | Gene3D:3.40.50.11850 | Gene3D:3.40.50.11860 | EntrezGene:825132 | ProteinID:AEE79947.1 |
| ProteinID:ANM65321.1 | ProteinID:ANM65322.1 | ArrayExpress:AT3G59630 | EnsemblPlantsGene:AT3G59630 | RefSeq:AT3G59630 | TAIR:AT3G59630 |
| RefSeq:AT3G59630-TAIR-G | EnsemblPlants:AT3G59630.2 | EMBL:AY075613 | EMBL:BT015772 | ProteinID:CAB75460.1 | InterPro:DHP2_euk |
| InterPro:DPH1/DPH2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006412 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0017183 | GO:GO:0019538 |
| RefSeq:NP_001327299.1 | RefSeq:NP_001327300.1 | RefSeq:NP_191522.1 | PFAM:PF01866 | PANTHER:PTHR10762 | PANTHER:PTHR10762:SF2 |
| UniProt:Q9M1A5 | TIGRFAMs:TIGR00272 | TIGRFAMs:TIGR00322 | UniParc:UPI00000A1F89 | SEG:seg | : |
Description
AT3g59630/T16L24_180 [Source:UniProtKB/TrEMBL;Acc:Q9M1A5]
Coordinates
chr3:-:22025003..22028523
Molecular Weight (calculated)
54845.9 Da
IEP (calculated)
5.364
GRAVY (calculated)
-0.251
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MELEFESKYE INRTAEFIIS KSFTRIALQF PDELLKDSTK VVSALKSKTR LLTDREVRFF VMADTTYGSC CIDEVGALHI DSECVVHYGQ TCLSPTSVLP
101: AFFVFGKASI NVSSCVKHLI DYASKSDKPI MILYGLEYAH VIPQIREELG LSKTDSQLSV ANVLCSFISP SKDPRESMEH PRPYSESDSS DSLSSSRSYR
201: LGGLTWDLPE GSKIEDYLLF WIGSDSSAFA NVVLTFNGCD IVRYDAEEDS LVTEFYQQRR ILKRRYYLVE KAKDANIIGI LVGTLGVAGY LHMIHHMQAL
301: ISAAGKKSYI LAMGRPNPAK LANFPECDVF IYISCAQTAL LDSKEFMSPV ITPFEANLAF SRGSEWTGAY LMHFQDVINS VKSESEAHIG SEEPRFSFFQ
401: GGYVEDHKTN DQAKNGEEDT GETMTLVQAA EKALQLRGND HNSLTKQTAA KSGPEYFLNR VYRGLEINSE NTLPEPYIVG RSGKASGYKH E
101: AFFVFGKASI NVSSCVKHLI DYASKSDKPI MILYGLEYAH VIPQIREELG LSKTDSQLSV ANVLCSFISP SKDPRESMEH PRPYSESDSS DSLSSSRSYR
201: LGGLTWDLPE GSKIEDYLLF WIGSDSSAFA NVVLTFNGCD IVRYDAEEDS LVTEFYQQRR ILKRRYYLVE KAKDANIIGI LVGTLGVAGY LHMIHHMQAL
301: ISAAGKKSYI LAMGRPNPAK LANFPECDVF IYISCAQTAL LDSKEFMSPV ITPFEANLAF SRGSEWTGAY LMHFQDVINS VKSESEAHIG SEEPRFSFFQ
401: GGYVEDHKTN DQAKNGEEDT GETMTLVQAA EKALQLRGND HNSLTKQTAA KSGPEYFLNR VYRGLEINSE NTLPEPYIVG RSGKASGYKH E
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.