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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 2
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d005857_P001 Maize cytosol, golgi 65.87 85.09
Os09t0453200-00 Rice endoplasmic reticulum, plasma membrane 79.81 78.3
TraesCS5D01G242600.1 Wheat endoplasmic reticulum 73.56 72.86
TraesCS5A01G235500.1 Wheat extracellular, vacuole 73.08 72.38
TraesCS5B01G233900.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 72.6 72.25
HORVU5Hr1G067730.1 Barley cytosol, peroxisome 73.56 68.0
EES07590 Sorghum endoplasmic reticulum, extracellular, vacuole 63.94 64.25
EER88046 Sorghum endoplasmic reticulum 65.87 64.02
KRH48283 Soybean cytosol 23.56 63.64
GSMUA_Achr6P02320_001 Banana endoplasmic reticulum, plasma membrane 62.02 59.72
VIT_12s0034g01440.t01 Wine grape endoplasmic reticulum, extracellular 60.58 58.33
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, plasma membrane 60.1 57.87
KRH59179 Soybean endoplasmic reticulum 58.17 57.35
GSMUA_Achr3P20310_001 Banana plasma membrane 58.17 56.02
Solyc11g013000.1.1 Tomato plastid 55.77 55.24
AT1G09580.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 57.21 54.84
PGSC0003DMT400002378 Potato endoplasmic reticulum, extracellular, plasma membrane 55.29 54.76
KRH18772 Soybean plasma membrane 56.25 54.42
Bra020010.1-P Field mustard endoplasmic reticulum, extracellular, golgi 54.81 53.77
KRH16308 Soybean endoplasmic reticulum 55.29 53.49
Solyc10g045640.1.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 54.81 53.27
Bra030786.1-P Field mustard extracellular 53.85 53.08
KRH43057 Soybean extracellular 39.42 52.56
KRH10436 Soybean endoplasmic reticulum 54.33 52.56
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, vacuole 55.29 52.51
PGSC0003DMT400061146 Potato extracellular 52.88 52.38
Solyc01g104220.2.1 Tomato endoplasmic reticulum 53.37 52.36
AT1G21900.1 Thale cress plasma membrane 54.33 52.31
CDY31789 Canola plasma membrane 53.85 52.09
CDY39938 Canola endoplasmic reticulum, extracellular, plasma membrane 53.85 51.85
Bra027911.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 53.85 51.85
CDX95293 Canola endoplasmic reticulum, extracellular, golgi 53.85 51.85
KRH53215 Soybean endoplasmic reticulum 52.4 51.42
VIT_18s0001g03200.t01 Wine grape endoplasmic reticulum 50.0 51.23
KRH64707 Soybean plasma membrane 52.88 51.16
AT1G57620.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 51.92 50.94
CDX93498 Canola endoplasmic reticulum, golgi, plasma membrane 54.81 50.89
Bra038147.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 52.4 50.7
CDY04681 Canola endoplasmic reticulum 50.96 50.48
CDY23801 Canola endoplasmic reticulum, extracellular, plasma membrane 51.92 50.23
CDY50894 Canola endoplasmic reticulum, golgi, plasma membrane 53.85 50.0
CDY31078 Canola endoplasmic reticulum 53.85 50.0
CDY20688 Canola endoplasmic reticulum, golgi, nucleus 53.37 49.55
PGSC0003DMT400045270 Potato endoplasmic reticulum, extracellular, plasma membrane 50.0 48.37
KRH44035 Soybean endoplasmic reticulum, mitochondrion, plasma membrane 56.25 47.56
KXG25366 Sorghum plasma membrane 56.25 46.8
CDX96570 Canola endoplasmic reticulum, extracellular, plasma membrane 51.44 45.92
CDY08168 Canola endoplasmic reticulum 36.06 45.45
PGSC0003DMT400045273 Potato endoplasmic reticulum, extracellular, plasma membrane 45.67 45.24
CDY38827 Canola endoplasmic reticulum, extracellular, vacuole 51.44 44.96
PGSC0003DMT400045277 Potato extracellular 45.67 44.39
Bra016401.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 51.44 44.21
Solyc06g060450.2.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 45.19 43.72
Solyc06g060430.1.1 Tomato cytosol 18.75 42.39
Solyc06g060440.1.1 Tomato endoplasmic reticulum, extracellular, plasma membrane 43.27 42.25
EER92205 Sorghum endoplasmic reticulum, extracellular, plasma membrane 37.5 36.45
GSMUA_Achr6P10010_001 Banana nucleus, peroxisome, plasma membrane 54.81 35.85
EER97600 Sorghum mitochondrion 38.46 34.93
Bra017957.1-P Field mustard endoplasmic reticulum, golgi, vacuole 36.06 24.12
OQU92664 Sorghum extracellular 27.88 23.58
OQU80774 Sorghum cytosol, plastid 17.79 16.82
OQU86595 Sorghum cytosol 15.87 13.52
Protein Annotations
MapMan:22.3.5.2EntrezGene:8062771UniProt:C5X285ncoils:CoilEnsemblPlants:EER96837ProteinID:EER96837
ProteinID:EER96837.1GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021
InterPro:GOLD_domInterPro:IPR009038PFAM:PF01105PFscan:PS50866PANTHER:PTHR22811PANTHER:PTHR22811:SF73
SMART:SM01190EnsemblPlantsGene:SORBI_3002G223000SignalP:SignalP-noTMInterPro:TMP21-relatedTMHMM:TMhelixUniParc:UPI0001A835A9
RefSeq:XP_002460316.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr2:+:61441856..61444713
Molecular Weight (calculated)
23072.9 Da
IEP (calculated)
7.599
GRAVY (calculated)
0.042
Length
208 amino acids
Sequence
(BLAST)
001: MARGGAWAAA AAVWWMVTGA GAVWLEIAPS GTKCVSEEIQ SNVVVIGDYS VLYEHHHAHP TIAVKVTSPF GDIVHKKEKV SMEQFAFTTA EAGNYLACFS
101: IDGEDRGLAV KLNLDWKVGI ATRDWNSVAK KEKIEGVELE LLKLEVAVQS IQDNLLLLKS KEANMRDVSE KTNSRVTWLS MLSLSVCIAV SVSQLWHLQQ
201: YFRKKKLI
Best Arabidopsis Sequence Match ( AT1G09580.1 )
(BLAST)
001: MKMTAKMRRE FPTAFLLLFL VPVMIPVGEA VWLDVPPTGT KCVSEEIQSN VVVLADYLII SEDHEVMPTI SVKVTSPYGN NLHNMENVTH GQFAFTTQES
101: GNYLACFWAD EKSHGNKNVS INIDWRTGIA AKDWASIAKK EKIEGVELEI RKLEGAVEAI HENILYLRNR EADMRTMSEK TNSRVAWYSI MSLGVCIAVS
201: GFQVLYLKQY FEKKKLI
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24delta3 [Source:UniProtKB/Swiss-Prot;Acc:Q6IDL4]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.