CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU86595	Sorghum	cytosol	79.55	71.72
Os03t0328300-01	Rice	extracellular	37.27	57.34
OQU92664	Sorghum	extracellular	50.0	44.72
GSMUA_Achr6P08610_001	Banana	endoplasmic reticulum, plasma membrane	25.45	26.17
EES07590	Sorghum	endoplasmic reticulum, extracellular, vacuole	20.0	21.26
EER92205	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	20.0	20.56
EER97600	Sorghum	mitochondrion	20.45	19.65
EER88046	Sorghum	endoplasmic reticulum	18.18	18.69
EER96837	Sorghum	extracellular	16.82	17.79
KXG25366	Sorghum	plasma membrane	14.55	12.8

Protein Annotations

EnsemblPlants:OQU80774	EnsemblPlantsGene:SORBI_3007G182801	Gene3D:2.60.120.330	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:GOLD_dom	InterPro:IPNS-like	InterPro:IPR009038	InterPro:IPR027443	InterPro:TMP21-related	PANTHER:PTHR22811
PANTHER:PTHR22811:SF69	PFAM:PF01105	PFscan:PS50866	ProteinID:OQU80774	ProteinID:OQU80774.1	SEG:seg
SUPFAM:SSF51197	UniParc:UPI000B8B95B2	UniProt:A0A1Z5RAH1	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr7:+:61592482..61593155

Molecular Weight (calculated)

23658.9 Da

IEP (calculated)

6.033

GRAVY (calculated)

-0.224

Length

220 amino acids

Sequence
(BLAST)

001: MFDTSTEKSG ATASASPAPS PIPCRWPDKP ARLREVVEWF TVQTRGLEMQ ILRLLCEGLG LRPDYLNWDI SSGDVMLCDV SATAVKALVF DVPSGSSKCL
101: TEELRRRAVS HASYRVVAES TSAADRRILV RVTGPRGEEL YVAEGGECGE FRFEAAEDGE HTACFWSPRY ERGAVVSIDV LRQEAGAAAG RAEHAGGGVG
201: LPHGGRMTGG SHLSSSIFTK

Best Arabidopsis Sequence Match ( AT1G09580.1 )
(BLAST)

001: MKMTAKMRRE FPTAFLLLFL VPVMIPVGEA VWLDVPPTGT KCVSEEIQSN VVVLADYLII SEDHEVMPTI SVKVTSPYGN NLHNMENVTH GQFAFTTQES
101: GNYLACFWAD EKSHGNKNVS INIDWRTGIA AKDWASIAKK EKIEGVELEI RKLEGAVEAI HENILYLRNR EADMRTMSEK TNSRVAWYSI MSLGVCIAVS
201: GFQVLYLKQY FEKKKLI

Arabidopsis Description

Transmembrane emp24 domain-containing protein p24delta3 [Source:UniProtKB/Swiss-Prot;Acc:Q6IDL4]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.