Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 7
- golgi 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P21760_001 | Banana | cytosol | 39.72 | 50.3 |
| GSMUA_AchrUn_... | Banana | cytosol | 39.25 | 49.7 |
| Os03t0328300-01 | Rice | extracellular | 28.04 | 41.96 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, vacuole | 39.25 | 38.36 |
| GSMUA_Achr6P02320_001 | Banana | endoplasmic reticulum, plasma membrane | 38.32 | 37.96 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 37.85 | 37.5 |
| GSMUA_Achr3P20310_001 | Banana | plasma membrane | 37.38 | 37.04 |
| OQU92664 | Sorghum | extracellular | 36.92 | 32.11 |
| GSMUA_Achr6P10010_001 | Banana | nucleus, peroxisome, plasma membrane | 39.72 | 26.73 |
| OQU80774 | Sorghum | cytosol, plastid | 26.17 | 25.45 |
| OQU86595 | Sorghum | cytosol | 25.23 | 22.13 |
Protein Annotations
| MapMan:22.3.5.2 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:GOLD_dom | EnsemblPlantsGene:GSMUA_Achr6G08610_001 |
| EnsemblPlants:GSMUA_Achr6P08610_001 | EnsemblPlants:GSMUA_Achr6T08610_001 | InterPro:IPR009038 | UniProt:M0T5B0 | PFAM:PF01105 | PFscan:PS50866 |
| PANTHER:PTHR22811 | PANTHER:PTHR22811:SF47 | SMART:SM01190 | SignalP:SignalP-noTM | InterPro:TMP21-related | TMHMM:TMhelix |
| UniParc:UPI000295A4FD | SEG:seg | : | : | : | : |
Description
Putative Transmembrane emp24 domain-containing protein bai [Source:GMGC_GENE;Acc:GSMUA_Achr6G08610_001]
Coordinates
chr6:+:5722103..5724911
Molecular Weight (calculated)
23984.0 Da
IEP (calculated)
6.161
GRAVY (calculated)
-0.038
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSSSPLRL PLLLLMVLAF VWSSRPSQAL VFHIPSGRVK CLTEDIRAGA MSLAHFRVAD DPAYGHNISA SVMDPNGEDL RRVVGVESGE FAFVATETGK
101: HTACFWSPHF QLEAAVTVDF EWKTGIAAKD WTSVAKKGKI DEMELELKKL EDSINSIHEE MIFLRNREEE ARRLNETTTS RMGSLSILSF IVCMGVAGLQ
201: LLHLKTFFQR EKIL
101: HTACFWSPHF QLEAAVTVDF EWKTGIAAKD WTSVAKKGKI DEMELELKKL EDSINSIHEE MIFLRNREEE ARRLNETTTS RMGSLSILSF IVCMGVAGLQ
201: LLHLKTFFQR EKIL
001: MFLQSQKLWT MLLILAIWSP ISHSLHFDLH SGRTKCIAED IKSNSMTVGK YNIDNPHEGQ ALPQTHKISV KVTSNSGNNY HHAEQVDSGQ FAFSAVEAGD
101: YMACFTAVDH KPEVSLSIDF EWKTGVQSKS WANVAKKSQV EVMEFEVKSL LDTVNSIHEE MYYLRDREEE MQDLNRSTNT KMAWLSVLSF FVCIGVAGMQ
201: FLHLKTFFEK KKVI
101: YMACFTAVDH KPEVSLSIDF EWKTGVQSKS WANVAKKSQV EVMEFEVKSL LDTVNSIHEE MYYLRDREEE MQDLNRSTNT KMAWLSVLSF FVCIGVAGMQ
201: FLHLKTFFEK KKVI
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24delta10 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY92]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.