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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 7
  • golgi 5
  • plastid 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus, plasma membrane, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os03t0376000-01 Rice endoplasmic reticulum, plasma membrane 79.91 73.71
EER97600 Sorghum mitochondrion 78.5 73.36
GSMUA_AchrUn_... Banana cytosol 56.07 71.01
GSMUA_Achr1P21760_001 Banana cytosol 56.07 71.01
CDY37184 Canola endoplasmic reticulum, peroxisome, plastid 16.36 70.0
VIT_14s0108g01140.t01 Wine grape extracellular 63.55 64.76
VIT_01s0182g00030.t01 Wine grape endoplasmic reticulum, extracellular, plasma membrane 60.75 61.32
CDY00102 Canola cytosol 48.13 60.95
Zm00001d047163_P001 Maize endoplasmic reticulum, extracellular, vacuole 68.69 59.27
KRG93569 Soybean endoplasmic reticulum, extracellular, plasma membrane 59.81 59.26
KRH18453 Soybean golgi, plasma membrane, vacuole 59.35 58.8
KRH50555 Soybean endoplasmic reticulum 59.81 57.92
AT1G26690.1 Thale cress endoplasmic reticulum, extracellular, vacuole 57.01 57.01
KRG89554 Soybean endoplasmic reticulum 58.41 56.82
PGSC0003DMT400073002 Potato extracellular 56.07 56.34
Solyc04g005570.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 56.07 55.81
Bra026866.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 55.14 55.66
CDY33785 Canola endoplasmic reticulum, extracellular, plasma membrane 55.14 55.66
Solyc05g013130.2.1 Tomato endoplasmic reticulum, extracellular, vacuole 55.14 55.4
CDY16125 Canola endoplasmic reticulum, extracellular, plasma membrane 54.67 55.19
CDX85047 Canola endoplasmic reticulum 55.14 55.14
PGSC0003DMT400007416 Potato endoplasmic reticulum, extracellular, vacuole 55.14 55.14
KRH70789 Soybean cytosol, vacuole 18.69 54.79
Bra024694.1-P Field mustard endoplasmic reticulum, plasma membrane 54.67 54.67
CDY16181 Canola endoplasmic reticulum, plasma membrane, vacuole 54.67 54.67
Bra036221.1-P Field mustard endoplasmic reticulum, extracellular 55.14 54.63
CDY19998 Canola endoplasmic reticulum, extracellular 55.14 54.63
CDX85243 Canola mitochondrion 56.07 54.05
KRH13540 Soybean cytosol 19.63 53.85
CDY03005 Canola endoplasmic reticulum, extracellular, plasma membrane 53.74 53.74
CDY45170 Canola endoplasmic reticulum, extracellular 53.74 53.74
Bra024781.1-P Field mustard endoplasmic reticulum, extracellular 53.74 53.74
AT2G03290.1 Thale cress extracellular 52.8 53.05
CDX96872 Canola endoplasmic reticulum, extracellular, plasma membrane 52.8 53.05
AT1G14010.1 Thale cress endoplasmic reticulum, extracellular, plasma membrane 52.34 52.83
CDY61620 Canola endoplasmic reticulum 52.8 52.8
Bra016283.1-P Field mustard endoplasmic reticulum 52.8 52.8
PGSC0003DMT400062438 Potato mitochondrion 53.27 52.78
CDY62212 Canola endoplasmic reticulum, extracellular, plasma membrane 52.34 52.58
CDY40925 Canola endoplasmic reticulum 52.8 52.56
Solyc01g010940.2.1 Tomato nucleus, plastid 52.8 52.31
Bra033081.1-P Field mustard golgi, plasma membrane, plastid 54.21 52.25
CDY44411 Canola golgi, plasma membrane, plastid 54.21 52.25
CDX95934 Canola vacuole 52.34 52.09
Bra004382.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 52.34 52.09
CDY04053 Canola endoplasmic reticulum 54.21 52.02
AT1G69460.1 Thale cress endoplasmic reticulum, extracellular, vacuole 51.87 51.87
CDY24142 Canola endoplasmic reticulum, plasma membrane, vacuole 51.87 51.87
CDY09334 Canola endoplasmic reticulum, extracellular, vacuole 52.34 51.85
Bra026559.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 52.34 51.85
CDY53680 Canola endoplasmic reticulum, extracellular, vacuole 51.87 51.39
AT3G29070.1 Thale cress mitochondrion 53.27 50.67
KRH01218 Soybean endoplasmic reticulum, plasma membrane, vacuole 50.0 49.08
KRH70788 Soybean extracellular 32.71 48.95
AT2G03040.1 Thale cress extracellular 35.98 46.39
EER88046 Sorghum endoplasmic reticulum 42.99 42.99
EES07590 Sorghum endoplasmic reticulum, extracellular, vacuole 41.12 42.51
Bra016715.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 39.72 42.29
EER96837 Sorghum extracellular 36.45 37.5
KXG25366 Sorghum plasma membrane 37.85 32.4
OQU92664 Sorghum extracellular 29.91 26.02
OQU80774 Sorghum cytosol, plastid 20.56 20.0
OQU86595 Sorghum cytosol 18.22 15.98
Protein Annotations
MapMan:22.3.5.2EntrezGene:8080480UniProt:C5WYM6ncoils:CoilEnsemblPlants:EER92205ProteinID:EER92205
ProteinID:EER92205.1GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783
GO:GO:0005789GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021InterPro:GOLD_dom
InterPro:IPR009038PFAM:PF01105PFscan:PS50866PANTHER:PTHR22811PANTHER:PTHR22811:SF112SMART:SM01190
EnsemblPlantsGene:SORBI_3001G357400SignalP:SignalP-noTMInterPro:TMP21-relatedTMHMM:TMhelixUniParc:UPI0001A821D8RefSeq:XP_002465207.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr1:+:64722404..64725213
Molecular Weight (calculated)
24320.2 Da
IEP (calculated)
7.613
GRAVY (calculated)
-0.280
Length
214 amino acids
Sequence
(BLAST)
001: MATRVRGCLL LVLLATAAPA GALRFDLLSG HTKCISDDIK VGAMAVGKYH VTGPDSQTQQ QLPDSHRISL RVTSPYGNSL HYAENVHSGN FAFTASENGD
101: YLACFWAPDH RPPATVAFEF DWRSGVSAKD WSAIAKKSQV EMMELELRKL EENIRSIHEE MYYLREREEE MQELNRRTNS RMAWLGFLSL TICLSVAGLQ
201: LWHLKNFFER KKLL
Best Arabidopsis Sequence Match ( AT1G26690.1 )
(BLAST)
001: MFLRSLNLCT ILLFLAISSQ VSQSLHFELQ SGRTKCISED IKSNSMTVGK YTVVNPNEAH PSPQSHKISI RVTSSYGNTY HHAEDVESGQ FAFTAVESGD
101: YMACYTAVDH KPEVTLSIDF DWRTGVQSKS WSSVAKKSQV EVMEFDVKRL IETVNSIHEE MFYLREREEE MQNLNRATNS KMAWLSFLSL FVCLGVAGMQ
201: FVHLKTFFEK KKVI
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24delta9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQY3]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.