Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004382.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 85.51 | 85.12 |
| CDY40925 | Canola | endoplasmic reticulum | 85.05 | 84.65 |
| CDX95934 | Canola | vacuole | 84.58 | 84.19 |
| AT1G26690.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 76.64 | 76.64 |
| KRH50555 | Soybean | endoplasmic reticulum | 64.49 | 62.44 |
| AT1G14010.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 61.22 | 61.79 |
| AT2G03290.1 | Thale cress | extracellular | 61.22 | 61.5 |
| KRG89554 | Soybean | endoplasmic reticulum | 63.08 | 61.36 |
| VIT_01s0182g00030.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 60.28 | 60.85 |
| PGSC0003DMT400073002 | Potato | extracellular | 59.81 | 60.09 |
| Solyc05g013130.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 59.35 | 59.62 |
| GSMUA_Achr1P21760_001 | Banana | cytosol | 46.73 | 59.17 |
| GSMUA_AchrUn_... | Banana | cytosol | 46.26 | 58.58 |
| PGSC0003DMT400007416 | Potato | endoplasmic reticulum, extracellular, vacuole | 58.41 | 58.41 |
| Solyc04g005570.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 58.41 | 58.14 |
| AT2G03040.1 | Thale cress | extracellular | 44.39 | 57.23 |
| PGSC0003DMT400062438 | Potato | mitochondrion | 56.07 | 55.56 |
| Solyc01g010940.2.1 | Tomato | nucleus, plastid | 54.67 | 54.17 |
| EER92205 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 51.87 | 51.87 |
| KRH70788 | Soybean | extracellular | 34.58 | 51.75 |
| KRH70789 | Soybean | cytosol, vacuole | 17.29 | 50.68 |
| Os07t0632700-01 | Rice | plasma membrane | 54.21 | 50.43 |
| TraesCS2B01G180800.1 | Wheat | mitochondrion | 52.8 | 49.56 |
| TraesCS2D01G161400.1 | Wheat | endoplasmic reticulum, plastid | 52.8 | 49.56 |
| Zm00001d022238_P001 | Maize | mitochondrion | 52.8 | 49.34 |
| TraesCS2A01G155600.1 | Wheat | golgi | 52.34 | 49.12 |
| EER97600 | Sorghum | mitochondrion | 52.34 | 48.91 |
| Zm00001d006951_P001 | Maize | mitochondrion | 51.87 | 48.47 |
| HORVU2Hr1G028220.5 | Barley | endoplasmic reticulum, extracellular | 52.34 | 48.28 |
| Os03t0376000-01 | Rice | endoplasmic reticulum, plasma membrane | 51.87 | 47.84 |
| AT3G29070.1 | Thale cress | mitochondrion | 50.0 | 47.56 |
| AT1G09580.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 41.12 | 40.55 |
| AT1G57620.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 37.85 | 38.21 |
| AT1G21900.1 | Thale cress | plasma membrane | 36.92 | 36.57 |
| Zm00001d047163_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 41.59 | 35.89 |
| AT3G10780.1 | Thale cress | endoplasmic reticulum, plasma membrane | 30.37 | 29.95 |
Protein Annotations
| MapMan:22.3.5.2 | EntrezGene:843278 | UniProt:A0A178WJ06 | ProteinID:AAG60114.1 | ProteinID:AEE34928.1 | EMBL:AF083711 |
| ArrayExpress:AT1G69460 | EnsemblPlantsGene:AT1G69460 | RefSeq:AT1G69460 | TAIR:AT1G69460 | RefSeq:AT1G69460-TAIR-G | EnsemblPlants:AT1G69460.1 |
| TAIR:AT1G69460.1 | EMBL:AY072343 | EMBL:AY114598 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | GO:GO:0032580 | GO:GO:0033116 |
| InterPro:GOLD_dom | InterPro:IPR009038 | RefSeq:NP_177105.2 | ProteinID:OAP18327.1 | PFAM:PF01105 | PO:PO:0000293 |
| PO:PO:0005052 | PFscan:PS50866 | PANTHER:PTHR22811 | PANTHER:PTHR22811:SF47 | UniProt:Q8VY92 | SMART:SM01190 |
| SignalP:SignalP-noTM | InterPro:TMP21-related | TMHMM:TMhelix | UniParc:UPI00000A1034 | : | : |
Description
Transmembrane emp24 domain-containing protein p24delta10 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY92]
Coordinates
chr1:-:26111688..26113256
Molecular Weight (calculated)
24415.2 Da
IEP (calculated)
6.676
GRAVY (calculated)
-0.248
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLQSQKLWT MLLILAIWSP ISHSLHFDLH SGRTKCIAED IKSNSMTVGK YNIDNPHEGQ ALPQTHKISV KVTSNSGNNY HHAEQVDSGQ FAFSAVEAGD
101: YMACFTAVDH KPEVSLSIDF EWKTGVQSKS WANVAKKSQV EVMEFEVKSL LDTVNSIHEE MYYLRDREEE MQDLNRSTNT KMAWLSVLSF FVCIGVAGMQ
201: FLHLKTFFEK KKVI
101: YMACFTAVDH KPEVSLSIDF EWKTGVQSKS WANVAKKSQV EVMEFEVKSL LDTVNSIHEE MYYLRDREEE MQDLNRSTNT KMAWLSVLSF FVCIGVAGMQ
201: FLHLKTFFEK KKVI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.