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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:
  • endoplasmic reticulum 6
  • golgi 5
  • extracellular 5
  • vacuole 4
  • plasma membrane 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane
Any Predictor:cytosol, secretory
BaCelLo:endoplasmic reticulum, extracellular, golgi
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra001380.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 71.43 71.43
CDY00701 Canola plasma membrane 67.74 70.67
CDX73906 Canola endoplasmic reticulum, extracellular, plasma membrane 67.74 70.67
CDX73903 Canola endoplasmic reticulum, extracellular, plasma membrane 67.74 70.67
CDY08577 Canola plasma membrane 67.28 69.52
CDY00971 Canola plasma membrane 67.28 69.52
Bra029868.1-P Field mustard plasma membrane 67.28 69.52
Bra034146.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 61.75 68.02
CDY36275 Canola endoplasmic reticulum, extracellular, plasma membrane 61.29 67.51
AT1G09580.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 53.92 53.92
AT1G57620.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 49.31 50.47
AT1G21900.1 Thale cress plasma membrane 49.77 50.0
AT1G14010.1 Thale cress endoplasmic reticulum, extracellular, plasma membrane 32.26 33.02
AT1G26690.1 Thale cress endoplasmic reticulum, extracellular, vacuole 30.88 31.31
AT2G03290.1 Thale cress extracellular 30.41 30.99
AT1G69460.1 Thale cress endoplasmic reticulum, extracellular, vacuole 29.95 30.37
AT2G03040.1 Thale cress extracellular 21.66 28.31
AT3G29070.1 Thale cress mitochondrion 28.11 27.11
Protein Annotations
MapMan:22.3.5.2EntrezGene:820247UniProt:A0A178V8R2ProteinID:AAF19571.1ProteinID:AEE74954.1ArrayExpress:AT3G10780
EnsemblPlantsGene:AT3G10780RefSeq:AT3G10780TAIR:AT3G10780RefSeq:AT3G10780-TAIR-GEnsemblPlants:AT3G10780.1TAIR:AT3G10780.1
Unigene:At.53256UniProt:F4J4Y0GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0006810GO:GO:0008150GO:GO:0015031GO:GO:0016020
GO:GO:0016021GO:GO:0016192InterPro:GOLD_domInterPro:IPR009038RefSeq:NP_187689.2ProteinID:OAP02118.1
PFAM:PF01105PO:PO:0000084PO:PO:0001185PO:PO:0007616PO:PO:0009009PO:PO:0009052
PO:PO:0025195PFscan:PS50866PANTHER:PTHR22811PANTHER:PTHR22811:SF76SMART:SM01190SignalP:SignalP-noTM
InterPro:TMP21-relatedTMHMM:TMhelixUniParc:UPI0001E92D41SEG:seg::
Description
Transmembrane emp24 domain-containing protein p24delta6 [Source:UniProtKB/Swiss-Prot;Acc:F4J4Y0]
Coordinates
chr3:+:3375105..3376335
Molecular Weight (calculated)
24231.5 Da
IEP (calculated)
7.548
GRAVY (calculated)
0.151
Length
217 amino acids
Sequence
(BLAST)
001: MAISPVLFIG LIYLAGGGSL FPGVEAIWLT VPESGERCVY EEIQANVVVV LDYICIDDAF TQLGPTLDVR VTSPYGKELY KIANVTHGQA AFTTSESGTF
101: LACLAMHHDQ SHHSVNSSVI VSLDWKMGIR AKDWDSVAKK EKIEGVELEI RRSTEYASAI RANILYLRIR EAYMREINEK TNTRVNQLGL MSLGVAIVVS
201: ISQVLYLKRY FLKKKLI
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.