Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034146.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 99.49 | 99.49 |
| CDY00701 | Canola | plasma membrane | 73.1 | 69.23 |
| CDX73906 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 71.57 | 67.79 |
| CDX73903 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 71.57 | 67.79 |
| CDY00971 | Canola | plasma membrane | 72.08 | 67.62 |
| CDY08577 | Canola | plasma membrane | 72.08 | 67.62 |
| AT3G10780.1 | Thale cress | endoplasmic reticulum, plasma membrane | 67.51 | 61.29 |
| CDY37184 | Canola | endoplasmic reticulum, peroxisome, plastid | 12.18 | 48.0 |
| CDX95293 | Canola | endoplasmic reticulum, extracellular, golgi | 44.67 | 40.74 |
| CDY39938 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 44.67 | 40.74 |
| CDX93498 | Canola | endoplasmic reticulum, golgi, plasma membrane | 45.69 | 40.18 |
| CDY50894 | Canola | endoplasmic reticulum, golgi, plasma membrane | 45.69 | 40.18 |
| CDY31789 | Canola | plasma membrane | 43.65 | 40.0 |
| CDY23801 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 42.64 | 39.07 |
| CDY20688 | Canola | endoplasmic reticulum, golgi, nucleus | 44.16 | 38.84 |
| CDY31078 | Canola | endoplasmic reticulum | 44.16 | 38.84 |
| CDY04681 | Canola | endoplasmic reticulum | 40.1 | 37.62 |
| CDX96570 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 44.16 | 37.34 |
| CDY38827 | Canola | endoplasmic reticulum, extracellular, vacuole | 43.65 | 36.13 |
| CDY16125 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 34.01 | 31.6 |
| CDY08168 | Canola | endoplasmic reticulum | 25.89 | 30.91 |
| CDY33785 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 32.99 | 30.66 |
| CDY00102 | Canola | cytosol | 25.89 | 30.18 |
| CDY62212 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 31.98 | 29.58 |
| CDX96872 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 31.98 | 29.58 |
| CDY45170 | Canola | endoplasmic reticulum, extracellular | 31.98 | 29.44 |
| CDY03005 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 31.47 | 28.97 |
| CDY61620 | Canola | endoplasmic reticulum | 30.96 | 28.5 |
| CDX85047 | Canola | endoplasmic reticulum | 30.96 | 28.5 |
| CDY16181 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 30.46 | 28.04 |
| CDY24142 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 29.95 | 27.57 |
| CDY19998 | Canola | endoplasmic reticulum, extracellular | 29.95 | 27.31 |
| CDY53680 | Canola | endoplasmic reticulum, extracellular, vacuole | 29.95 | 27.31 |
| CDY09334 | Canola | endoplasmic reticulum, extracellular, vacuole | 29.44 | 26.85 |
| CDX85243 | Canola | mitochondrion | 29.44 | 26.13 |
| CDY40925 | Canola | endoplasmic reticulum | 27.92 | 25.58 |
| CDX95934 | Canola | vacuole | 27.41 | 25.12 |
| CDY44411 | Canola | golgi, plasma membrane, plastid | 27.92 | 24.77 |
| CDY04053 | Canola | endoplasmic reticulum | 27.92 | 24.66 |
Protein Annotations
| EnsemblPlants:CDY36275 | EnsemblPlantsGene:GSBRNA2T00060241001 | GO:A0A078HD03 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:GOLD_dom | InterPro:IPR009038 | InterPro:TMP21-related | PANTHER:PTHR22811 | PANTHER:PTHR22811:SF76 | PFAM:PF01105 |
| PFscan:PS50866 | ProteinID:CDY36275 | ProteinID:CDY36275.1 | SignalP:SignalP-noTM | SMART:SM01190 | TMHMM:TMhelix |
| UniParc:UPI0004EDCD52 | UniProt:A0A078HD03 | MapMan:22.3.5.2 | : | : | : |
Description
BnaA01g31430DBnaA01g31430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HD03]
Coordinates
chrLK032372:+:56567..57623
Molecular Weight (calculated)
21773.5 Da
IEP (calculated)
8.616
GRAVY (calculated)
0.145
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MVISPLLVIA LVCLAGGGSH LPAVEAIWLT IPRAGDRCVY EEIQANVVVV GDFLCIDQNN EVGLGPTVNI RVTSAYGKEV YKRTNVTQGR FAFTTSESGT
101: YLACLSMHKD QTHYAVDNST AIVSLDWKMG IGTKDWDAIA KKEKIEASFK EASMREINEK TNKRVVQLSF MSVGLSVVVS LFQVWHLKGF FLKKKLI
101: YLACLSMHKD QTHYAVDNST AIVSLDWKMG IGTKDWDAIA KKEKIEASFK EASMREINEK TNKRVVQLSF MSVGLSVVVS LFQVWHLKGF FLKKKLI
001: MKMTAKMRRE FPTAFLLLFL VPVMIPVGEA VWLDVPPTGT KCVSEEIQSN VVVLADYLII SEDHEVMPTI SVKVTSPYGN NLHNMENVTH GQFAFTTQES
101: GNYLACFWAD EKSHGNKNVS INIDWRTGIA AKDWASIAKK EKIEGVELEI RKLEGAVEAI HENILYLRNR EADMRTMSEK TNSRVAWYSI MSLGVCIAVS
201: GFQVLYLKQY FEKKKLI
101: GNYLACFWAD EKSHGNKNVS INIDWRTGIA AKDWASIAKK EKIEGVELEI RKLEGAVEAI HENILYLRNR EADMRTMSEK TNSRVAWYSI MSLGVCIAVS
201: GFQVLYLKQY FEKKKLI
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24delta3 [Source:UniProtKB/Swiss-Prot;Acc:Q6IDL4]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.