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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 7
  • golgi 5
  • plastid 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus, plasma membrane, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY36275 Canola endoplasmic reticulum, extracellular, plasma membrane 99.49 99.49
Bra001380.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 76.14 69.12
Bra029868.1-P Field mustard plasma membrane 72.59 68.1
AT3G10780.1 Thale cress endoplasmic reticulum, plasma membrane 68.02 61.75
Bra020010.1-P Field mustard endoplasmic reticulum, extracellular, golgi 45.69 42.45
Bra030786.1-P Field mustard extracellular 44.67 41.71
Bra027911.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 45.18 41.2
Bra038147.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 43.15 39.53
Bra016401.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 44.67 36.36
Bra026866.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 33.5 31.13
Bra024781.1-P Field mustard endoplasmic reticulum, extracellular 32.49 29.91
Bra016283.1-P Field mustard endoplasmic reticulum 31.47 28.97
Bra024694.1-P Field mustard endoplasmic reticulum, plasma membrane 30.96 28.5
Bra036221.1-P Field mustard endoplasmic reticulum, extracellular 29.95 27.31
Bra026559.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 29.44 26.85
Bra004382.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 27.92 25.58
Bra033081.1-P Field mustard golgi, plasma membrane, plastid 28.43 25.23
Bra016715.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 21.83 21.39
Bra017957.1-P Field mustard endoplasmic reticulum, golgi, vacuole 29.44 18.65
Protein Annotations
EnsemblPlants:Bra034146.1EnsemblPlants:Bra034146.1-PEnsemblPlantsGene:Bra034146GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:GOLD_domInterPro:IPR009038InterPro:TMP21-relatedPANTHER:PTHR22811PANTHER:PTHR22811:SF76PFAM:PF01105
PFscan:PS50866SignalP:SignalP-noTMSMART:SM01190TMHMM:TMhelixUniParc:UPI0002543DD0UniProt:M4EZA3
MapMan:22.3.5.2:::::
Description
AT3G10780 (E=6e-054) | emp24/gp25L/p24 family protein
Coordinates
chrA01:-:27232307..27233363
Molecular Weight (calculated)
21787.6 Da
IEP (calculated)
8.616
GRAVY (calculated)
0.143
Length
197 amino acids
Sequence
(BLAST)
001: MVISPLLVIA LVCLAGGGSH LPAVEAIWLT IPRAGDRCVY EEIQANVVVV GDFLCIDQNN EVGLGPTVNI RVTSAYGKEV YKRTNVTQGR FAFTTSESGT
101: YLACLSMHKD QTHYAVDNST AIVSLDWKMG IGTKDWDAIA KKEKIEASFK EASMREINEK TNKRVVQLSF MSLGLSVVVS LFQVWHLKGF FLKKKLI
Best Arabidopsis Sequence Match ( AT3G10780.1 )
(BLAST)
001: MAISPVLFIG LIYLAGGGSL FPGVEAIWLT VPESGERCVY EEIQANVVVV LDYICIDDAF TQLGPTLDVR VTSPYGKELY KIANVTHGQA AFTTSESGTF
101: LACLAMHHDQ SHHSVNSSVI VSLDWKMGIR AKDWDSVAKK EKIEGVELEI RRSTEYASAI RANILYLRIR EAYMREINEK TNTRVNQLGL MSLGVAIVVS
201: ISQVLYLKRY FLKKKLI
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24delta6 [Source:UniProtKB/Swiss-Prot;Acc:F4J4Y0]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.